Table 2 Frequencies of malaria-resistant alleles by time period in nine selected genes and 224 available ancient European genomes.

From: Malaria was a weak selective force in ancient Europeans

 

FCGR2B

TIRAP

GRK5

IL-10

ATP2B4

MARVELD3

ABO

rs1050501

rs8177374

rs2230345

rs1800890

rs4951074

rs10900585

rs2334880

rs8176746

rs8176719

UPPER PALEOLITHIC

TT = 7

CC = 6 CT = 3

AA = 10 A* = 1

AA = 1 TA = 2 TT = 1

GG = 12 GA = 2

TT = 12 GT = 2

GG = 5 AG = 9 G* = 7

GG = 8 G* = 9

– = 3 -G = 2 GG = 1

EARLY NEOLITHIC

TT = 10 T* = 1

CC = 3 CT = 8 TT = 1 T* = 2

AA = 13 A* = 2

AA = 2 TA = 2 TT = 1

GG = 17 GA = 1

TT = 13 T* = 2

GA = 1 GG = 16 A* = 3

GG = 24 G* = 12

– = 2 GG = 3 -G = 3

MIDDLE NEOLITHIC

TT = 1 T* = 1

TT = 1 C* = 2

AA = 3 A* = 2

TA = 1

GG = 5 GA = 1

TT = 4 GT = 2 T* = 4 G* = 1

GG = 4 G* = 2 A* = 1

GG = 4 G* = 8

– = 2

LATE NEOLITHIC

TT = 3 T* = 1

CC = 2 TT = 1 C* = 1

AA = 5 A* = 2

TA = 1

GG = 6

TT = 5 G* = 4 T* = 8

GG = 6 G* = 1

GG = 5 G* = 14 T* = 1

– = 2 GG = 1 -G = 2

BRONZE AGE

TT = 24 TC = 1

CC = 15 CT = 3 TT = 1 C* = 1

AA = 19 A* = 2

AA = 1 TA = 4 TT = 4

GG = 20 GA = 4

TT = 23 GT = 1 T* = 10 G* = 5

GG = 16 GA = 5 AA = 1

GG = 21 GT = 1 G* = 6

–* = 4 GG = 4

IRON AGE

TT = 7

CC = 5

AA = 4 AT = 1

AA = 2, TT = 3

GG = 6 GA = 1

TT = 5 G* = 1,T* = 1

GG = 6 G* = 1 A* = 1

GG = 6 G* = 1

– = 3 GG = 1 -G = 1

ROMAN

TT = 2

CC = 2 CT = 1

AA = 5

TT = 3

GG = 5

TT = 5

GG = 5

GG = 5

– = 1

POST-ROMAN

TT = 2 CT = 1

CC = 2 CT = 4

AA = 6

TA = 3 TT = 2

GG = 8

TT = 8

GG = 7 GA = 1

GG = 8

– = 1 GG = 2 -G = 2

ANCIENT POPULATIONS

T = 98% C = 2%

C = 76% T = 24%

A = 99% T = 1%

C = 40%, T = 60%

G = 95% A = 5%

G = 8% T = 92%

G = 90% A = 10%

G = 99% T = 1%

- = 57,5% G = 42,5%

GLOBAL EUROPEAN

EUR:T = 86%,T = 14%

EUR:C = 81%,T = 19%

EUR:A = 99%,T = 1%

EUR:A = 63%,T = 37%

EUR:G = 90%,A = 10%

EUR:T = 90%,G = 10%

EUR:G = 84%,A = 16%

EUR:G = 92%,T = 8%

EUR:- = 61%, G = 39%

  1. The frequencies of current European populations are displayed below the ancient populations. All genotypes included passed an imputation filter > 0.95. The * sign denotes that a specific allele is present, but we cannot confidently imputate the genotype. Only those SNPs showing at least one diverse allele have been included.