Figure 2
Assessment of fold-change-specific auxin response in auxin-reprogrammed transcriptome (6 h; 1 µM IAA). (A) Scale for the fold change intervals with the threshold values to subdivide UGs and DGs into 6 equal in size gene groups (6 quantiles). (B) The fold change intervals for UGs (yellow boxes) and DGs (blue boxes) associated with specific regulation of genes detected at least for one GO term. Each GO term was associated with only one fold change interval (either a single quantile or combination of neighboring quantiles) possessing the most significant enrichment (for UGs and DGs separately). The shortest intervals correspond to the tightest fold-change-specificity of auxin response. The longest intervals (from very weak to very strong) are not fold-change-specific. The numbers in the boxes indicate the amount of GO terms associated with auxin regulation within the fold change interval. On the left panel, blue and yellow boxes in one line correspond to the same set of GO terms. vs – very strong, s – strong, i – intermediate, m – moderate, w – weak, vw – very weak.
