Table 4 Structural genes for complete (a) and incomplete (b) Class IIa operons.
From: Bacteriocin Gene-Trait matching across the complete Lactobacillus Pan-genome
Species | Strain | Structural Peptide | Homolog (%Amino Acid Identity) |
|---|---|---|---|
(a) Structural Genes for Complete Class IIa Operons | |||
L. hordei | DSM 19519 | KYYGNGVTCGKHSCSVDWGKATTCIINNGAMAWATGGHQGTHKC | Coagulin (100%) |
KYYGNGVSCTKKHGCKVNWGQAFTCSVNRFANFGHGNC | Plantaricin 423 (74%) | ||
L. acidipiscis | DSM 15836 | KYYGNGLHIPKHGKPYINWGQAIQSIGKISYHGWVNGITSGAAGVGRH | Hiracin JM79 (44%) |
L. futsaii | JCM 17355 | KYYGNGVSCGKHTCKVNWGQAWNESVNRWGNSWVNGLTGLRQH | Plantaricin 423 (57%) |
C. maltaromaticum | DSM 20722 | AISYGNGVYCNKEKCWVNKAENKQAITGIVIGGWASSLAGMGH | Carnobacteriocin cbn BM1 (100%) |
VYYGNGVSCSKTKCSVNWGQAFQERYTAGINSFVSGVASGAGSIGRRP | Carnobacteriocin cbn B2 (98%) | ||
(b) Structural Genes for Incomplete Class IIa Operons | |||
L. agilis | DSM 20509 | SRYYGNGITCGKHKCTVNWGQAWTCGVNRLANFGHGNC | Plantaricin 423 (73%) |
L. aquaticus | DSM 21051 | KNYGNGVYCTKKHGYKVDWGQAWSIIGNNSAANSTTRGAAGWKSK | Avicin A (74%) |
L. rennini | DSM 20253 | KYYGNGVSCSKHSCSVDWGKALTCTINNGAMAWTTGGHQGNHKC | Pediocin Ach/PA-1 (89%) |
L. ruminis | DSM 20403 | KYYGNGVYCGKHKCRVDWGQAWGCSVNRWGAAVGTGGKATIGHC | Pediocin Ach/PA-1 (55%) |
P. pentosaceus | DSM 20336 | KYYGNGLYCGKHSCSVDWGKATTCIINNGAMAWATGGHQGTHKC | Pediocin Ach/PA-1 (93%) |
C. maltaromaticum | DSM 20342 | AISYGNGVYCNKEKCWVNKAENKQAITGIVIGGWASSLAGMGH | Carnobacteriocin cbn BM1 (100%) |
