Table 2 Primers and joint DNAs used in this study.

From: Novel loop-mediated isothermal amplification (LAMP) assay with a universal QProbe can detect SNPs determining races in plant pathogenic fungi

Primer

Sequences 5′-3′

Use

Reference

SIX3-F3

TGTCCATGACATGGGTTTGC

SIX3 detection

This study

SIX3-B3

CAGTCCCGAATTGCCAGC

 

This study

SIX3-FIP

TATGGGTTACCCCGTCCTTGGA-TGGGCTACCTGTGGAAGA

 

This study

SIX3-BIP

ACGAGCTTCAGCACCGAACC-CGCTCATATGGAGGGTCTCT

 

This study

SIX3-LF

GCTGACCGACAGATGAATCGG

 

This study

SIX3-LB

TCTGGGTTATGCTAGAATGTTACAC

 

This study

Joint DNA 1

TGCGTGTTTCCCGGCC - UQprobe*

 

This study

Joint DNA 2

CCCGGCCGCCGCACGTCTTCTAC - UQprobe*

 

This study

SIX3 F

TATATTACCGACCATCTTGCCTAAACATTTACCA

SIX3 mutagenesis

This study

SIX3 R

GCCAAGGGGAACTGCCACAG

 

This study

G137CF

TGCGTGTTTCCCGGCCGCCCCACGTCTTCTACTTCATTTACTA

 

This study

G137CR

AAATGAAGTAGAAGACGTGGGGCGGCCGGGAAACACGCAAT

 

This study

SIX4 F

ACTCGTTGTTATTGCTTCGG

SIX4 detection

Inami et al.11

SIX4 R

CGGAGTGAAGAAGAAGCTAA

 

Inami et al.11

SIX4-F3

TCCAGTTGGAGCAAGTTGG

 

Ayukawa et al.18

SIX4-B3

TGCCCGTCTCTGCGATAG

 

Ayukawa et al.18

SIX4-FIP

GCCTCCTTGTCATCTACCGCATTTGGGGTGATAGAGAGCCTG

 

Ayukawa et al.18

SIX4-BIP

ATGGCAAAGTTGTCACGCGTGTTGGGCCTTGAGTCGAATG

 

Ayukawa et al.18

SIX4-LF

GACGGAGAGCAAGTAGCGT

 

Ayukawa et al.18

SIX4-LB

CAGGAAAGCCAGGAATAGGACGA

 

Ayukawa et al.18

  1. *3′ ends of joint DNAs consist of UQprobe-G complementary sequences