Table 2 Information about the sequence datasets analysed.
Sample set | GARD | SLAC p0.05 | FEL p0.01 | FEL p0.05 | IFEL p0.05 | REL 100 | dN/dS | Tra/Trv-ML | Tra/Trv-MCL | NT diffs | NT% | AA diffs | AA% |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
701-3013 incl sample18 & Yamagata | nil | nil | neg cod 713 | neg 7 codons | neg cod 713 | neg 55 codons | 0.061 | 9.17 | 9.11 | 64/2313 | 2.77 | 9/771 | 1.17 |
701-3013 17 samples | nil | nil | nil | neg codon 53, 175 & 511 | nil | neg 25 codons | 0.060 | 9.68 | 18.2 | 29/2313 | 1.25 | 4/771 | 0.52 |
3014-7234 A 17 samples | nil | nil | nil | nil | nil | POS codon 55, 731&1296 REM add 771 to codon | 0.160 | 8.33 | 9.69 | 117/4218 | 2.77 | 28/1406 | 1.99 |
701-7234 A 17 samples | nt 3550 p0.01 | neg codon 53 & 175 | neg codon 53 & 175 | neg codon 53, 175 & 511 | neg codon 53 & 175 | POS codon 826, 1502 & 2067 | 0.132 | 8.7 | 10.62 | 146/6531 | 2.24 | 32/2177 | 1.47 |
1-7334 A 17 samples | nt 997 p0.01 & nt 3025 p0.05 | NA | NA | NA | NA | NA | NA | 7.85 | 9.52 | 154/7334 | 2.1 | NA | NA |
5′-UTR 1-700 | ND | NA | NA | NA | NA | NA | NA | 8.01 | 2.84 | 8/700 | 1.14 | NA | NA |
3′UTR 7232-7334 | ND | NA | NA | NA | NA | NA | NA | NA | NA | 0/103 | 0 | NA | NA |
