Table 1 Summary of genes analyzed.

From: Candidate regulators of Early Leaf Development in Maize Perturb Hormone Signalling and Secondary Cell Wall Formation When Constitutively Expressed in Rice

Lab ID

Gene ID

Gene Family

Rice variety

Lines examined

Phenotype in overexpression line

JL2

GRMZM2G028046

MYB-interacting (ZmMIL1)

Kitaake

T1 (2)

Normal (Supplementary Dataset S3 and Information S3)

JL3

GRMZM2G136494

MYB-interacting (ZmMIL2)

Kitaake

T1 (3)

Normal (Supplementary Dataset S3 and Information S3)

JL4

GRMZM2G045883

bHLH (ZmSPL1)

Kitaake

T1 (2)

Normal (Supplementary Dataset S3 and Information S3)

JL8

GRMZM2G131516

GRAS (ZmSCR1)

Kitaake

T1 3)

Normal (Supplementary Dataset S3 and Information S3)

JL13

AC215201.3_FG008

bHLH

Kitaake

T1 (2)

Normal (Supplementary Dataset S3 and Information S3)

JL15

GRMZM2G016477

LRR kinase

Kitaake

T2 (3)

Normal (Supplementary Dataset S3 and Information S3)

JL22

GRMZM2G480386

YUCCA

Kitaake

T0 (>20)

Defective regeneration (Fig. 1)

JL23

GRMZM2G069365

ZnF HD (ZmHBa)

Kitaake

T0 (2)

Spindly (Fig. 6)

JL24

GRMZM2G417229

ZnF HD (ZmHBb)

Kitaake

T0 (6)

Spindly (Fig. 6)

JL25

GRMZM2G425236

ZnF HD (ZmHBc)

Kitaake

T0 (6)

Spindly (Fig. 6)

JL26

GRMZM2G119359

Growth regulating factor

Kitaake

T1 (2)

Normal (Supplementary Dataset S3 and Information S3)

JL27

GRMZM5G893117

Growth regulating factor

Kitaake

T1 (4)

Normal (Supplementary Dataset S3 and Information S3)

JL28

GRMZM2G114893

Unknown

Kitaake

T0 (8)

Stunted growth (Fig. 4)

JL29

GRMZM2G178182

bHLH

Kitaake

T1 (2)

Normal (Supplementary Dataset S3 and Information S3)

JL30

GRMZM2G140669

GATA ZnF

Kitaake

T1 (2)

Normal (Supplementary Dataset S3 and Information S3)

JL31

GRMZM2G472945

TUBBY-like

Kitaake

T1 (2)

Normal (Supplementary Dataset S3 and Information S3)

JL32

GRMZM2G146688

AP2

Kitaake

T1 (4)

Normal (Supplementary Dataset S3 and Information S3)

JL33

GRMZM2G111045

R2R3 MYB

Kitaake

T1 (2)

Drooping leaf (Fig. 3)

JL34

GRMZM2G377217

WRKY (ZmWRKY12)

Kitaake

T0 (>20) T1 (2)

No regeneration/inducible mini-plant (Fig. 5)

JL35

GRMZM2G023051

Unknown

Kitaake

T1 (2)

Normal (Supplementary Dataset S3 and Information S3)

JL36

GRMZM2G109480

Unknown

Kitaake

T1 (2)

Normal (Supplementary Dataset S3 and Information S3)

JL38

GRMZM2G074032

Znf C2H2 (ZmIDD16)

Kitaake

T0 (>20)

No regeneration

JL39

GRMZM2G027068

bHLH (ZmbHLH106)

Kitaake

T0 (>20)

No regeneration

JL40

GRMZM2G140694

Znf C2H2 (ZmHCA2)

Kitaake

T0 (>20)

No regeneration

JL43

GRMZM2G098988

bHLH (ZmSACL3)

IR64

T0 (>20)

Defective regeneration (Fig. 1)

JL44

GRMZM2G123900

Znf DOF

IR64

T0 (19)

Normal (Supplementary Dataset S2 and Information S2)

JL45

GRMZM2G374986

MYB

IR64

T0 (35)

Normal (Supplementary Dataset S2 and Information S2)

JL46

GRMZM2G011463

Auxin SAUR (ZmSAUR60)

IR64

T0 (35)

Defective regeneration (Fig. 1)

JL47

GRMZM2G097275

SBP

Kitaake

T1 (2)

Normal (Supplementary Dataset S3 and Information S3)

JL48

GRMZM2G148467

SBP

Kitaake

T1 (2)

Normal (Supplementary Dataset S3 and Information S3)

JL49

GRMZM2G028643

LRR kinase

Kitaake

T1 (2)

Normal (Supplementary Dataset S3 and Information S3)

JL50

GRMZM2G163724

LRR kinase

Kitaake

T1 (2)

Slow growth and dwarfed (Fig. 2)

JL51

GRMZM2G178102

Class III HD-ZIP

Kitaake

T1 (2)

Normal (Supplementary Dataset S3 and Information S3)

JL53

GRMZM2G163975

AP2

IR64

T0 (20)

Normal (Supplementary Dataset S2 and Information S2)

JL54

GRMZM2G077219

Unknown

IR64

T0 (17)

Normal (Supplementary Dataset S2 and Information S2)

JL55

GRMZM2G082586

bHLH

IR64

T0 (10)

Normal (Supplementary Dataset S2 and Information S2)

JL56

GRMZM2G171365

MADS box

IR64

T0 (34)

Normal (Supplementary Dataset S2 and Information S2)

JL57

GRMZM2G098813

LFY

IR64

T0 (34)

Normal (Supplementary Dataset S2 and Information S2)

JL59

GRMZM2G139324

Unknown

IR64

T0 (35)

Normal (Supplementary Dataset S2 and Information S2)

JL60

GRMZM2G061314

LRR binding protein

IR64

T0 (28) T1 (2)

Normal (Supplementary Dataset S2 and S3, Information S2 and S2)

JL61

GRMZM2G151955

LRR-RLK

IR64

T0 (34)

Normal (Supplementary Dataset S2 and Information S2)

JL62

GRMZM2G159953

Lectin family RK

IR64

T0 (10)

Normal (Supplementary Dataset S2 and Information S2)

JL63

GRMZM2G039934

LRR-RLK (TDR/PXY)

IR64

T0 (35)

Normal (Supplementary Dataset S2 and Information S2)

JL64

GRMZM2G046316

LRR-RLK

IR64

T0 (35)

Normal (Supplementary Dataset S2 and Information S2)

JL65

GRMZM2G034155

LRR-RLK

IR64

T0 (35)

Normal (Supplementary Dataset S2 and Information S2)

JL66

GRMZM2G114276

LRR-RLK

IR64

T0 (35)

Normal (Supplementary Dataset S2 and Information S2)

JL67

GRMZM2G059117

LRR-RLK

IR64

T0 (34)

Normal (Supplementary Dataset S2 and Information S2)

JL68

GRMZM2G089819

LRR-RLK (Brassinosteroid)

IR64

T0 (35) T1 (2)

Normal (Supplementary Dataset S2 and S3, Information S2 and S2)

JL69

GRMZM2G344857

PIP kinase

IR64

T0 (35)

Normal (Supplementary Dataset S2 and Information S2)

JL70

GRMZM2G087243

Armadillo-like

IR64

T0 (34)

Normal (Supplementary Dataset S2 and Information S2)

JL71

GRMZM2G133716

Forkhead domain

IR64

T0 (29)

Normal (Supplementary Dataset S2 and Information S2)

JL72

GRMZM2G469304

Ternary complex factor MIP1

IR64

T0 (35)

Normal (Supplementary Dataset S2 and Information S2)

JL75

GRMZM5G850129

Growth regulating factor

IR64

T0 (5) T1 (2)

Normal (Supplementary Dataset S2 and S3, Information S2 and S2)

JL76

GRMZM2G061734

SBP

IR64

T0 (13) T1 (2)

Normal (Supplementary Dataset S2 and S3, Information S2 and S2)

JL77

GRMZM2G318592

ZnF C2H2

IR64

T0 (35)

Normal (Supplementary Dataset S2 and Information S2)

JL78

GRMZM2G095899

bHLH

IR64

T0 (10)

Normal (Supplementary Dataset S2 and Information S2)

JL79

GRMZM2G015666

bHLH

IR64

T0 (35)

Normal (Supplementary Dataset S2 and Information S2)

JL80

GRMZM2G126018

SBP

IR64

T0 (27) T1 (2)

Normal (Supplementary Dataset S2 and S3, Information S2 and S2)

JL81

GRMZM2G312419

R2R3 MYB

IR64

T0 (17) T1 (2)

Normal (Supplementary Dataset S2 and S3, Information S2 and S2)

JL82

GRMZM2G478876

Serine Threonine kinase

IR64

T0 (31) T1 (10)

Normal (Supplementary Dataset S2 and S3, Information S2 and S2)

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