Table 1 Overview of transcriptome assembly, annotation and CDS prediction.
Lithospermum erythrorhizon | Arnebia euchroma | Echium plantagineum | ||
|---|---|---|---|---|
Assembly | Total Length (bp) | 84,508,068 | 87,189,611 | 55,592,752 |
N50 Length (bp) | 1,856 | 1,629 | 1,653 | |
GC (%) | 39.84 | 40.62 | 40.76 | |
Total Unigenes | 76,455 | 89,639 | 54,627 | |
Annotation | NR | 50,832 | 57,717 | 39,503 |
NT | 41,021 | 45,267 | 32,705 | |
SwissProt | 35,812 | 40,061 | 28,792 | |
InterPro | 40,327 | 42,085 | 31,160 | |
KEGG | 38,173 | 43,093 | 29,514 | |
COG | 21,514 | 21,975 | 16,409 | |
GO | 7,486 | 10,182 | 7,871 | |
Overall | 54,128 | 61,221 | 41,313 | |
CDS prediction | Blast CDS | 50,396 | 56,602 | 38,863 |
ESTScan CDS | 3,279 | 4,126 | 1,578 | |
Total CDS | 53,675 | 60,728 | 40,441 |
