Table 2 Target-capture enriched sequencing and genotyping efficiency between J. edwardsii and S. verreauxi sampling.

From: Efficiency of ddRAD target enriched sequencing across spiny rock lobster species (Palinuridae: Jasus)

Species

J. edwardsii (N = 11)

S. verreauxi (N = 16)

Processed reads

740,745

544,149

On-target reads

558,595

416,393

Reads mapped to original probe set

296,247

239,490

PCR duplicates

117,566

91,787

ddRAD loci BLAST hits

1,516

1,250

ddRAD loci mapped (Bowtie2)

922

784

Average coverage

29.21X

19.10X

% missing ddRAD loci*

24.04 ± 19.53

31.20 ± 27.30

  1. *Missing data was estimated as the average missing percentage across validated loci.
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