Table 2 Differential gene expression analysis.

From: Chickpea-Fusarium oxysporum interaction transcriptome reveals differential modulation of plant defense strategies

DGE sets

No. of differentially expressed genes

Up-regulated genes

Down-regulated genes

Significantly expressed genes in only one Library

DE_JGC_JGI (CA genes)

3816

1230

1647

695 (JGC), 256 (JGI)

DE_DVC_DVI (CA genes)

3429

1390

1100

312 (DVC), 349 (DVI)

DE_JGC_DVC (CA genes)

2987

937

1092

77 (JGC), 68 (DVC)

DE_JGI_DVI (CA genes)

3622

1694

1106

480 (JGI), 904 (DVI)

DE_JGI_DVI (FO genes)

NIL

NIL

NIL

533 (JGI), 5 (DVI)

  1. Differential Gene Expression (DGE) Sets represent comparisons among the four SAGE libraries. For example, DE_JGC_JGI shows DEGs up- or down-regulated in JGI compared to JGC. CA stands for Cicer arietinum (chickpea) and FO stands for Fusarium oxysporum.
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