Figure 3
From: Rapid de novo assembly of the European eel genome from nanopore sequencing reads
Graph simplifications. Scaffolds were extracted from a graph consisting of seed sequences (nodes) linked by nanopore reads (edges). Here, a small final scaffold (number 2231, 252.2 kbp) is shown in red in the context of the initial seed graph (all seeds at a distance of up to ten links from the final scaffold). Fragments of ten other scaffolds (blues) are directly or indirectly connected to scaffold 2231 by a few incorrect links (dotted lines). Seeds and links removed during graph simplification are shown in grey. Scaffolds can be discontinuous in the initial graph, as additional long-distance links are added in a later stage. The graph was visualized using Cytoscape (version 3.4.0).
