Figure 5
From: Rapid de novo assembly of the European eel genome from nanopore sequencing reads
Full-genome alignment of the final assembly. (a) The final uncorrected scaffolds (N50 = 1.19 Mbp, y-axis) were aligned to the 2012 A. anguilla assembly (N50 = 77.6 kbp, x-axis) using nucmer51 with minimum match length 100, filtered for best pairwise matches between scaffolds (delta-filter -1), and plotted using the mummerplot --layout option. The grey area corresponds to small scaffolds in the 2012 assembly that are not part of a best reciprocal match. (b–f) More detailed alignments between the five largest nanopore scaffolds (y-axes) and their best matches in the 2012 draft assembly (x-axes). Grey vertical lines indicate scaffold boundaries. These figures were generated in R (version 3.3.1) based on mummerplot output. 2012 draft scaffolds with minimal contributions to the overall alignment were removed manually. Arrowheads indicate discrepancies between both assemblies.
