Figure 3
Comparison of the protein flexibility of Calf-1 through different metrics. 3D structures of Calf-1 domain represented through (A) B-factor values, (B) RMSF values, and (C) N eq values. Local structure is ranked from rigid (thin blue line, a value of 0.0) to flexible (thick red line, a value of 4.0). Residues with completed missing atoms are in grey in the B-factor cartoon (A). (D) The Calf-1 amino acid sequence is placed in regard to its secondary structures assignment and to protein flexibility according to the B-factor, the RMSF or the N eq values. Blue, green, yellow, orange and red colours scale the structure from rigid to flexible. The loops are: loop 1 (size: 9, positions 603–611), loop 2 (size: 10, positions 620–629), loop 3 (size: 7, positions 640–646), loop 4 (size: 4, positions 653–656), loop 5 (size: 8, positions 665–672), loop 6 (size: 6, positions 678–683), loop 7 (size: 6, positions 690–695), loop 8 (size: 8, positions 708–715), loop 9 (size: 11, positions 725–735), and loop 10 that begins at position 742.
