Table 3 Summary of HF-regulated microRNAs detected by next generation deep sequencing (NGS), differential expression by miRNA array and validation by stem-loop qPCR.
From: Identification of novel microRNAs in the sheep heart and their regulation in heart failure
Annotation | Mean Counts | Mean Intensity | Fold change | Fold change |
|---|---|---|---|---|
NGS | Array | Array | RT-qPCR | |
hsa-/mmu-miR-1-3p/rno-miR-1b | 1525891 | 14.7 | ย | 1.01 |
hsa-/mmu-/rno-miR-133a-3p | 312 | 14.7 | ย | 1.31 |
hsa-/mmu-/rno-miR-133b-3p | 315 | 15.1 | ย | 1.60** |
hsa-/mmu-/rno-miR-208b-3p | 6099 | 12.8 | ย | 1.65* |
hsa-/mmu-/rno-miR-499-3p | 375 | 11.8 | 1.43* | 1.06 |
hsa-/mmu-/rno-miR-125a-5p | 8302 | 11.0 | 1.62* | 1.37* |
hsa-/mmu-/rno-/oar-miR-125b-5p | 933 | 13.8 | 1.62* | 1.43* |
hsa-/mmu-/rno-miR-126-3p | Not detected | 13.9 | 1.50* | 1.49** |
hsa-/mmu-/rno-miR-210-3p | 18 | 6.7 | 1.43* | 2.88*** |
hss-/mmu-/rno-miR-224-5p | 718 | 7.3 | 1.85* | 1.52 |
hsa-mmu-/rno-/oar-494-3p | 229 | 5.7 | โ1.62* | 1.82** |
hsa-miR-23c | Not detected | 11.0 | 1.59* | โ1.05 |
hsa-miR-378d | 82 | 11.7 | 1.53* | โ1.22 |
hsa/mmu/rno-21-5p | 2 | 11.0 | โ4.23* | 2.03* |
hsa-/mmu-/rno-/oar-miR-29a-3p | 24 | 12.4 | 1.77* | 1.81* |
hsa-/mmu-/rno-320a | 1950 | 8.9 | ย | 1.55** |
hsa-/mmu-/rno-miR-10b-5p | 1 | 7.3 | ย | 1.45 |