Table 2 Viral proteins identified in the BmNPV polyhedral matrix by a Q Exactive LC-ESI-MS/MS analysis.

1

8

Polyhedrin

28.8

ENC¹⁷

NC¹⁷

No

M1 (18; 64.9), M2 (28; 97.55), M3 (27; 97.55), M4 (25; 97.55), M5 (23; 96.33)

2

9

P78/83

60.9

NC^{38, 39}, ENC¹⁷

NC^{17, 38, 39}

M2(6; 16.42), M3 (3; 9.23), M5 (1; 2.40)

3

10

PK1

32.4

NC⁴⁰

NC⁴⁰

No⁴¹

M3 (1; 4.36)

4

11

39.8

Yes(No)⁴²

M1 (1; 4.12), M3 (9; 36.47)

5

13

39.3

Yes(Yes)⁴³

M4 (1; 2.42)

7

15

EGT

57.0

Yes(Yes)⁴⁴

M5 (1; 2.77)

8

16

BV/ODV-E26

26.2

ENC⁴⁵

ENC⁴⁵

Yes(Yes)⁴⁴

M5 (1; 6.11)

9

17

24.1

ENC¹⁷

Yes(Yes)^{44, 46}

M5(2; 14.29)

10

18

41.5

Yes(Yes)⁴⁷

M1 (1; 5.06), M3 (6; 24.44)

11

19

12.5

M2 (1; 15.45)

14

23

F protein

78.0

E¹²

E^{17, 22}

Yes(Yes)^{48, 49}

M1 (1; 2.23)

15

24

PKIP

19.4

ENC¹⁷

No⁵⁰

M5 (7; 49.70)

17

26

14.5

Unknown¹⁷

M1 (1; 9.30), M5 (7; 25.58)

19

28

LEF-6

20.3

Unkown¹⁷

M5 (1; 6.36)

22a

M3 (1; 20.37)

23

31

SOD

16.3

E¹⁷

Yes(Yes)⁵¹

M1 (2; 19.87), M3 (2; 15.23), M5(5; 53.64)

26

35

Ubiquitin

8.7

E^{17, 52}

E^{17, 22, 52}

Yes³⁵

M1 (2; 32.47), M2 (1; 20.78), M3 (3; 49.35), M5(2; 44.16)

27

36

PP31

31.5

Unknown²²

Yes(Yes)⁵³

M1 (1; 5.78), M2 (1; 5.42)

29

38

25.5

E⁵⁴

M1 (1; 3.69), M3 (1; 4.15), M5 (1; 5.07)

30

39

P43

43.3

Yes⁵⁵

M2 (1; 4.14), M3 (1; 4.14)

34

43

9.0

Yes, but few^{56, 57}

M3 (1; 19.23), M5(6; 61.54)

36

45

22.5

M3 (1; 5.18)

37

46

ODV-E66

79.2

E^{12, 17, 22, 58}

Yes(Yes)⁵⁹

M1(10; 21.08), M2(21; 49.29), M3(17; 41.60), M5(5; 13.25)

38

47

ETS/TRAX

10.5

M5 (1; 12.36)

40

51

37.8

ENC¹⁷

Unknown^{22, 60}

M3 (3; 13.48)

43

54

VP1054

42.0

NC¹⁷

NC⁶¹

Yes(No)^{62, 63}

M3 (2; 7.12)

47

58/59

ChaB

37.8

NC^{17, 64}

NC¹⁷

M5(4; 46.2)

48

60

9.7

M1 (1; 12.05), M3 (1; 12.05), M5(2; 13.25)

49

61

FP25K

25.3

NC⁶⁵, ENC¹⁷

NC^{17, 65}

Yes, but few(Yes, but few)^66,67,68

M5 (1; 8.88)

51

63

18.5

E⁶⁹

M4 (1; 5.81)

53

65

DNAPOL

114.4

Unknown¹⁷

No⁷⁰

M1 (1; 2.64)

54

66

93.3

ENC¹⁷, E⁷¹

NC¹⁷

Yes⁷²

M1(8; 15.16), M2(2; 3.85)

55

67

LEF-3

44.9

Unknown¹⁶

M2(1; 3.90), M3(6; 20.26), M4(1; 3.38), M5 (1; 2.60)

57

69

30.4

Yes(Yes)⁷³

M5 (1; 7.63)

59

73

11.5

Unknown²²

Yes(Yes)⁷⁴

M5(4; 58.59)

60

74

31.0

Unknown¹²

E¹⁷

M3 (1; 3.36)

61

75

15.5

E¹⁷

ENC¹⁷

M5 (5; 35.34)

62

76

9.6

E⁷⁵

E⁷⁵

Yes(No)⁷⁶

M1 (1; 15.29), M5(2; 16.47)

63

77

VLF-1

44.3

ENC¹⁷

NC⁷⁷

Yes, but few (No)^{62, 78}

M1 (6; 17.41), M2 (3; 9.50), M3 (8; 26.65), M5(4; 12.93)

65

79

12.2

Unknown¹²

Yes(Yes)⁷⁹

M5 (2; 17.31)

66

80

GP41

44.9

ENC¹⁷

ENC¹⁷

Yes⁶²

M1 (12; 41.69), M2 (6; 17.12), M3 (15; 59.31), M4(1; 6.20), M5(2; 9.18)

67

81

27.0

Unknown¹⁷

Yes(No)⁸⁰

M2 (1; 4.27), M5 (1; 5.56)

68

82

TLP

20.1

E⁸¹

Yes(Yes)⁸¹

M2 (2; 25.41), M4(1; 4.42)

69

83

95.8

E¹⁷, ENC⁸²

Yes(No)^{83, 84}

M1 (2; 4.53), M2 (2; 4.77), M5 (1; 2.26)

70

87

VP15

15.1

M1 (1; 17.46), M2 (1; 17.46), M3 (1; 17.46)

71

88

CG30

30.7

Unknown¹²

Yes(Yes)^{85, 86}

M1 (1; 5.24), M3 (1; 6.37)

72

89

VP39

39.3

NC^{17, 22, 87}

NC^{17, 22, 87}

M1 (1; 4.00), M3 (4; 20.29), M5 (1; 4.00)

75

92

P33

30.9

ENC^{17, 88}

ENC⁸⁹

Yes(No and singly enveloped nucleocapsid)⁸⁸

M1(7; 22.01), M2(7; 32.05), M3(8; 28.96), M4(16; 77.22), M5(14; 62.93)

76

93

NC⁹⁰

ENC⁹⁰

Yes(No)⁹⁰

M5(4; 32.92)

77

94

ODV-E25

25.6

E^{17, 22, 91}

E^{17, 22}

Yes(No)⁹²

M1 (2; 15.35), M2 (1; 7.89), M3 (3; 28.07), M5(10; 60.96)

78

95

DNA helicase/P143

143.6

Unknown^{12, 17, 22}

M2 (1; 0.65), M5 (1; 1.15)

79

96

PIF-4

21.0

E^{17, 93,94,95}

E⁹⁵

Yes⁹⁵

M5 (1; 8.79)

80

BRO-b

27.5

M2 (1; 4.18)

81

BRO-c

35.9

M4(1; 2.83), M5 (2; 7.55)

82

98

38 K

38.0

NC^{17, 96}

NC^{17, 96}

Yes(No)⁹⁷

M3 (3; 11.88)

84

100

P6.9

8.1

NC^{17, 98}

NC^{17, 98}

Yes(No)⁹⁹

M1 (1; 12.31)

85

101

BV/ODV-C42

41.6

NC^{17, 100}

NC^{17, 101}

M3 (5; 21.55), M5 (1; 1.93)

87

103

P48

45.4

ENC¹⁷

Yes(No)¹⁰²

M1 (5; 12.66), M2 (3; 10.34), M3 (12; 39.02), M5 (2; 5.17)

88

104

VP80

79.9

ENC¹⁷, NC^{103, 104}

NC^{103, 104}

M1 (9; 19.65), M2 (10; 23.12), M3 (7; 15.75)

91

108

11.8

E^{105, 106}

Yes(Yes)¹⁰⁶

M3 (1; 27.62)

92

109

ODV-EC43

45.0

ENC^{17, 107}

ENC¹⁰⁸

Yes(No)^108,109,110

M1 (5; 18.41), M3 (14; 53.96), M5(4; 12.79)

92a

6.8

M2 (1; 47.46)

93

111

8.2

M1 (1; 20.09), M5 (1; 14.93)

94

114

49.4

Unknown^{12, 14, 111}

Unknown²²

Yes(Yes)¹¹²

M1 (3; 10.14), M3 (11; 39.86), M5(3; 12.74)

95

115

PIF-3

23.0

E^{17, 113}

Yes(Yes)^{114, 115}

95a

116

M1 (1; 25.00)

98

120

9.5

M5 (1; 13.41)

100

123

PK2

26.0

M5 (6; 28.89)

104

127

V-cath

36.9

ENC¹¹⁶

M1 (1; 3.10), M5 (4; 17.96)

106

129

P24

21.8

NC^{17, 117}

NC^{17, 117}

M1 (6; 37.44), M2 (5; 46.15), M3 (8; 58.97), M4 (2; 11.28), M5 (15; 73.33)

107

130

GP16

12.1

Yes(Yes)¹¹⁸

M5 (1; 10.38)

108

131

PEP

35.4

NC¹⁷

NC¹⁷

Yes(Yes)¹¹⁹

M1 (5; 16.51), M2 (2; 9.52), M3 (7; 32.70), M4 (3; 19.68), M5(5; 26.03)

109

132

25.2

NC¹²⁰

NC¹²⁰

Yes(Few)¹²⁰

M4 (1; 4.09)

110

133

ALK-EXO

48.5

Unknown¹²

M3 (1; 1.67)

110a

M3 (1; 28.07)

111

Yes(Yes)¹²¹

M3 (1; 20.00)

112

135

P35

34.5

Yes(Yes)^{53, 122}

M3 (6; 24.08), M5(2; 11.04)

114

137

P10

7.5

Yes(Yes)^{119, 123,124,125}

M5 (1; 27.14)

115

138

P74/PIF-0

74.0

E^{12, 17, 126}

Yes(Yes)^{115, 126}

M5 (1; 1.71)

116

139

ME53

52.6

NC¹²⁷

NC^{127, 128}

Yes¹²⁹

M1 (1; 2.00), M3 (6; 19.73), M5 (1; 2.00)

117

141

EXON0

30.1

Unknown¹³⁰

NC¹³⁰

Yes¹³¹

M3 (1; 4.21), M5 (1; 5.36)

118

142

55.5

ENC¹⁷

NC^{101, 132}

Yes(No)^{132, 133}

M1 (8; 21.22), M2 (15; 47.90), M3 (16; 41.06), M5(2; 4.2)

119

143

ODV-E18

10.4

E^{17, 22, 134}

E^{17, 22}

Yes¹³⁵

M5 (1; 23.76)

120

144

ODV-EC27

33.5

ENC¹³⁴

NC¹⁰¹

M3 (7; 31.03)

121

145

11.0

Unknown¹³⁶

Unknown¹³⁶

Yes(Yes)¹³⁶

M5 (1; 22.11)

122

146

22.9

Unknown¹³⁷

NC¹³⁷

Yes¹³⁷

M5(4; 28.36)

124

148

ODV-E56/PIF-5

41.3

E^{17, 138}

Unknown²²

Yes(Yes)^{139, 140}

M1 (1; 5.33), M3 (5; 24.00), M5(3; 9.6)

125

149

12.3

M5 (1; 27.36)

128

153

PE38

36.1

Yes(Yes)¹⁴¹

M5 (1; 3.24)

129

154

8.9

M3 (3; 66.23), M5 (3; 67.53)

130

1

PTP

19.3

Unknown¹⁴²

ENC¹⁴³

Yes(Yes)¹⁴²

M5 (1; 9.52)

131

2

BRO-d

40.1

M2 (2; 5.73)

134

5

12.4

Unknown¹⁴⁴

M1(3; 40.37), M2(2; 32.11), M3(2; 32.11), M4(3; 40.37), M5(10; 72.38)