Table 6 Performance effect of PairHMM library implementation in GATK 3.7 HaplotypeCaller.
From: Accelerating next generation sequencing data analysis with system level optimizations
PairHMM library | Execution time of HaplotypeCaller using GCAT genome data (in Hours) | Execution time of HaplotypeCaller using Platinum genome data (in Hours) |
|---|---|---|
No PairHMM library | 1.14 | 30.43 |
VectorPairHMM library | 0.902 | 17.46 |
