Figure 6
From: Genome-Wide Linkage-Disequilibrium Mapping to the Candidate Gene Level in Melon (Cucumis melo)
Mapping of yellow rind trait. (a) Examples of some fruits with yellow and white rinds used for the analysis of the trait. (b) Yellow or white rind colors projected on genetic PCA plot. (c) Manhattan plot of GWA of rind color (both simple model (GLM) and population structure corrected model (MLM_Q + K) are presented). (d) Quantile-quantile (Q-Q) plot for distribution of P values at the MLM_Q + K model. The negative logarithm of the observed (y axis) and the expected (x axis) P value is plotted for each SNP (dot). The gray dashed line indicates the null hypothesis. (e) Zoom in on chromosome 10 peak where causative gene CmKFB (MELO3C011980)10 is shown. (f) Contingency analysis for distribution of rind color across alleles at Chr10_SNP3541676.
