Table 2 Throughput and quality of RNA-seq of the litchi SAMs from four treatments at three time points.

From: RNA-seq analysis of apical meristem reveals integrative regulatory network of ROS and chilling potentially related to flowering in Litchi chinensis

Treatments

No. of basepairs (109)

Total Reads (106)

Clean Reads (106)

Q20 percentage (%)

GC percentage (%)

0D

5.78

3.86

3.83

98.17

46.61

L30D

5.09

3.39

3.37

98.08

45.73

L75D

5.50

3.68

3.64

97.90

47.14

M30D

5.77

3.85

3.82

97.96

46.51

M75D

4.96

3.31

3.28

97.78

47.94

MM30D

4.93

3.28

3.26

97.95

46.09

MM75D

5.92

3.95

3.92

98.23

44.99

H30D

5.38

3.59

3.56

97.89

48.09

H75D

5.42

3.62

3.58

97.69

48.13

  1. Litchi trees were grown in chambers at different temperatures for the following treatments: 15 °C/8 °C (day/night temperature, 12 h day and 12 h night) as low temperature plus water treatment, 18 °C/13 °C as medium temperature plus water treatment, 18 °C/13 °C as medium temperature plus MV treatment, and 25 °C/20 °C as high temperature plus water treatment. The treatments in the first column of the table respectively indicate 0 d (0D), 30 d of low temperature plus water (L30D), 75 d of low temperature plus water (L75D), 30 d of medium temperature plus water (M30D), 75 d of medium temperature plus water (M75D), 30 d of medium temperature plus MV (MM30D), 75 d of medium temperature plus MV (MM75D), 30 d of high temperature plus water (H30D), and 75 d of high temperature plus water (H75D) treatments.
Back to article page