Table 2 Summary of genetic diversity, neutrality and mismatch analyses of each population.

From: Phylogeographic studies of schizothoracine fishes on the central Qinghai-Tibet Plateau reveal the highest known glacial microrefugia

Site	D-loop									SSR
Site	N	h	π	Fu’s Fs	Tajiama’s D	SSD (P)	Ri	Tau	Growth began, kya (95% CI)	Ai	H_O	H_E
TT1	16	0.656	0.0015	−1.80622	−1.32888	0.00216(0.84)	0.03146	2.14	115.3(195.1–63.2)	2.60	0.643	0.850
TT2	17	0.844	0.0061	−2.62032	−0.31492	0.00151(0.18)	0.04900	1.79		2.39	0.591	0.855
SC	15	0.889	0.0124	−5.68972	−0.7133	0.01536(0.10)	0.05168	2.88		2.66	0.682	0.882
BT	19	0.821	0.003	−4.26003	−1.95308	0.01527(0.12)	0.07584	2.26		2.49	0.632	0.871
PC	13	0.586	0.0024	−4.17854	−2.19562	0.03185(0.13)	0.08640	0.67	21.8(28.3–17.6)	2.44	0.615	0.873
NaC	22	0.771	0.0025	−3.61855	−1.06759	0.0133(0.46)	0.05150	3.23	77.2(148.6–47.8)	2.38	0.589	0.858
MC	12	0.676	0.0022	−2.28126	−0.79545	0.04338(0.22)	0.16480	3.29	58.7(74.3–18.3)	2.54	0.652	0.851
KC	26	0.872	0.0134	−0.38542	1.28883	0.04091(0.04)	0.01300	6.52	43.8(77.1–10.5)	2.45	0.612	0.843
YC	10	0.459	0.0063	−0.80531	−1.21009	0.01708(0.10)	0.17679	0.59	36.2(69.5–19.8)	2.49	0.632	0.848
GC	3	0.465	0.0009	3.41636	−0.70289	0.26121(0.00)	0.21524	0.48	—	2.44	0.615	0.773
NC1	10	0.758	0.0025	−8.71945	−1.31482	0.02172(0.27)	0.06494	3.23	55.8(95.6–21.8)	2.48	0.615	0.843
NC2	12	0.792	0.0021	−4.7548	−1.0241	0.02341(0.24)	0.05471	3.06	55.8(95.6–21.8)	2.45	0.608	0.832
BC	5	0.334	0.0011	−1.76001	−1.33196	0.03082(0.22)	0.35734	2.0	42.9(46.3–12.8)	2.39	0.596	0.811
ML	16	0.722	0.0016	−10.3530	−1.32417	0.00891(0.08)	0.09448	3.75	101.3(133.5–70.5)	2.42	0.604	0.863
LR	15	0.873	0.002	−10.1344	−1.69583	0.00245(0.54)	0.06768	3.62	101.3(133.5–70.5)	2.52	0.613	0.881
ATC	32	0.913	0.0129	−3.75926	1.01608	0.04675(0.18)	0.02066	4.88	137.2(252.6–48.7)	2.46	0.605	0.865
YuC	13	0.878	0.0032	−2.7032	0.34479	0.00064(0.33)	0.03037	3.42	137.2(252.6–48.7)	2.38	0.601	0.849
DC	18	0.930	0.0032	−10.3569	−1.02339	0.00064(0.89)	0.03386	2.69	130.7(188.6–89.1)	2.41	0.582	0.893
TH	22	0.899	0.0032	−13.4682	−1.17882	0.00294(0.55)	0.02884	2.91	130.7(188.6–89.1)	2.31	0.567	0.888

N, the number of D-loop haplotypes; h, haplotype diversity; π, nucleotide diversity; Ai, the average number of alleles per individual at a locus; H_O, observed heterozygosity; H_E, expected heterozygosity; SSD and Ri, Sum of squares deviations and Raggedness index of mismatch distribution; Tajiama’s D and Fu’s Fs are statistics of neutrality tests; Significant values (P ≤ 0.05) are indicated in bold. When estimate the growth began data, we treat each river as one site, and Siling Co and directly connected rivers as one site.

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Table 2 Summary of genetic diversity, neutrality and mismatch analyses of each population.

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