Table 1 Samples used for RNAseq analysis. See Methods for experimental conditions.

From: Transcriptome reprogramming during developmental switching in Physarum polycephalum involves extensive remodeling of intracellular signaling networks

Experiment

Strain

Starved for

Far-red (FR)

Dark control or time after FR

Sporulated plasmodia

Matched to give dataset

Seqcount

#1

LU897 × LU898

6d

DC

0 of 1

0–6 h

 

0–10 h

5915413

LU897 × LU898

6d

40 min

6 h

1 of 1

0–6 h

6–10 h

 

5678394

#2

LU897 × LU898

6d

DC

0 of 1

0–6 h

 

0–10 h

15242846

LU897 × LU898

6d

40 min

8 h

1 of 1

 

6–10 h

0–10 h

40986624

LU897 × LU898

6d

40 min

10.5 h

1 of 1

 

6–10 h

0–10 h

23138471

#3

WT31

6d

DC

0 of 1

0–6 h

 

0–10 h

19941711

WT31

6d

DC

0 of 1

0–6 h

 

0–10 h

19499417

WT31

6d

30 min

6.5 h

1 of 1

0–6 h

6–10 h

 

18279213

WT31

6d

30 min

6.5 h

1 of 1

0–6 h

6–10 h

 

19346090

#3

WT31 × MA275

7d

DC

0 of 5

0–6 h

 

0–10 h

36374249

WT31 × MA275

7d

40 min

6 h

4 of 5

0–6 h

6–10 h

 

37574067

WT31 × MA275

7d

40 min

8 h

5 of 5

 

6–10 h

0–10 h

38406990