Figure 3 | Scientific Reports

Figure 3

From: Whole genome sequencing-based association study to unravel genetic architecture of cooked grain width and length traits in rice

Figure 3

SNP-based GWAS for grain shape (GS) and association signals detected on chromosome 3, 5, 7, 10 and 11. GS being a derived trait from the ratio of GL to GWi, association signals detected in both GL and GWi were expected to show up in GS. Results showed that the cloned genes for GWi (GW5) and GL (GS3) were detected, and new candidate loci in chromosomes 3, 7 and 11 detected previously in GW and GL GWAS were also detected in japonica (A,D), indica (B,E) and all (C,F combined) panel (left side) in raw (left) and cooked grain (right), respectively. A new locus in chromosome 10 (GSc10.1) was also detected. Horizontal red and blue line represents the genome-wide significant threshold −log10(P) value of 7 and 5, respectively.

Back to article page