Table 1 scRNA-seq data sets analysed in this study.
From: Impact of sequencing depth and read length on single cell RNA sequencing data of T cells
Dataset | Dataset | Reference | Accession number | Organism | Number of cells | Average reads length (bp) | Average number of PE reads (x106 reads) | scRNA-seq protocol | Number of genes expressed (FPKM >1) per cell |
|---|---|---|---|---|---|---|---|---|---|
1 | HCV specific CD8 + T cells | Elthala20 | E-MTAB-4850 | human | 54 | 145 | 8.4 | Smart-Seq. 2 | 2,563 |
2 | HCV specific CD8 + T cells | Elthala20 | E-MTAB-4850 | human | 12 | 215 | 3.5 | Smart-Seq. 2 | 3,289 |
3 | Th17 cells (A) | Gaublomme24 | GSE74833 | mouse | 399 | 125 | 2.5 | Smart-Seq | 5,128 |
4 | Th17 cells (B) | Gaublomme24 | GSE74833 | mouse | 269 | 100 | 3.7 | Smart-Seq | 6,540 |
5 | Th17 cells (C) | Gaublomme24 | GSE74833 | mouse | 100 | 25 | 1.5 | Smart-Seq | 4,146 |
6 | CD4 + T cells | Stubbington21 | E-MTAB-3857 | mouse | 272 | 100 | 4.3 | Smart-Seq | 2,354 |
7 | CD8 + T cells | Kimmerling25 | GSE74923 | mouse | 106 | 32 | 1.2 | Smart-Seq. 2 | 6,796 |
8 | Th2 | Mahata26 | E-MTAB-2512 | mouse | 93 | 75 | 16.3 | Smarter-Seq | 6,401 |
