Table 3 εRMSD comparison of solution-state NMR structures from the PDB to 13-residue loop from MODEL 1 of inverted SINEB2/38 (U72-A84) obtained from simulated annealing in this work.
pdbID | eRMSD | Sequence | Description | residues |
|---|---|---|---|---|
5LSN | 0.00 | UGGUUGUGAACCA | Inverted SINEB2 MODEL 1 | 72–84 |
2N4L | 0.76 | CUAUAGUGAAUAG | HIV-1 Intron Splicing Silencer | 22–34 |
2KPC | 0.82 | AGCACAGUUUGCU | 3′-untranslated region of Flaviviridae | 03–15 |
2LBJ | 0.92 | GCCUUGCCAAGGU | Glycyl-tRNA anticodon stem-loop from Bacillus subtilis | 03–15 |
2M57 | 0.92 | GCGGUAGUUCCGC | Azotobacter vinelandii Intron 5 | 11–23 |
1A51 | 0.95 | UGGGGUCUCCCCA | Loop E-loop D region of Escherichia coli 5 S rRNA | 82–94 |
2MFD | 0.96 | GUUCGCUUAGAAC | Pentaloop from Bovine Enterovirus Vir404/03 | 58–70 |
2LPA | 0.96 | AGGACAUAGUCUU | Mutant of the sub-genomic promoter from Brome Mosaic Virus | 02–14 |
