Table 1 Transcriptional values of representative genes overexpressed in the ∆yedF mutant compared to the wild-type SL1344. Fold change indicate the ratio between the expression levels in SL1344 and ∆yedF. For RNA-Seq, only statistically significant results (p < 0.05) are represented.
Enzymes and related genes | Locus tag | Gene | Description | Fold change (∆yedF/ SL1344) |
|---|---|---|---|---|
Nitrate/nitrite reductase | ||||
SL1344_1689-SL1344_1695 | narIJHGKXL | respiratory nitrate reductase | 2.07–30.19 | |
SL1344_2225-SL1344_2231 | napCBHGADF | periplasmic nitrate reductase | 3.46–12.09 | |
SL1344_2443 | narQ | nitrate/nitrite sensor protein NarQ | 4.08 | |
SL1344_3441-SL1344_3443 | nirBDC | nitrite reductase | 8.98–38.90 | |
SL1344_4213-SL1344_4217 | nrfABCDE | Nitrite reductase complex | 1.34–5.16 | |
Fumarate reductase | ||||
SL1344_4277-SL1344_4280 | frdDCBA | fumarate reductase | 3.40–4.76 | |
Anaerobic dimethyl sulfoxide reductase | ||||
SL1344_0902 | dmsA | anaerobic dimethyl sulfoxide reductase subunit A | 16.37 | |
SL1344_1428 | dmsA2 | putative dimethyl sulfoxide reductase subunit | 14.79 | |
SL1344_4242 | — | anaerobic dimethyl sulfoxide reductase chain | 7.42 | |
Anaerobic ribonucleoside reductase | ||||
SL1344_4381-SL1344_4382 | nrdGD | anaerobic ribonucleoside-triphosphate reductase activating protein | 3.21–12.49 | |
Anaerobic glycerol-3-phosphate dehydrogenase | ||||
SL1344_2253-SL1344_2255 | glpABC | anaerobic glycerol-3-phosphate dehydrogenase | 2.56–5.28 | |
Hydrogenase | ||||
SL1344_2833 | hycA | formate hydrogenlyase regulatory protein | 4.82 | |
SL1344_2834-SL1344_2838 | hypABCDE | Hydrogenase maturation proteins | 2.67–10.38 | |
SL1344_2839 | fhlA | transcriptional activator of the formate hydrogenlyase system | 5.33 | |
SL1344_3118-SL1344_3124 | hybFEDCBA | hydrogenase-2 | 2.04–6.49 | |
SL1344_4221 | fdhF | putative formate dehydrogenase H | 4.16 | |
