Table 1 Summary of Illumina sequencing and transcriptome assemblies for RNA-Seq libraries.

From: Transcriptomic profiling of Alternaria longipes invasion in tobacco reveals pathogenesis regulated by AlHK1, a group III histidine kinase

Sample

Clean reads(ratio)

Nucleotides (nt)

Mapped reads (ratio)

C-00 0 hpi

21,589,652 (97.76%)

2,698,706,500

18,712,425 (86.67%)

C-00 6 hpi

26,204,502 (98.21%)

3,275,562,750

19,266,771 (73.52%)

C-00 12 hpi

25,129,686 (98.16%)

3,141,210,750

18,419,541 (73.30%)

C-00 20 hpi

24,676,514 (98.23%)

3,084,564,250

17,765,576 (71.99%)

HKΔ4 0 hpi

25,593,108 (97.97%)

3,199,138,500

20,933,206 (81.79%)

HKΔ4 6 hpi

23,333,938 (97.86%)

2,916,742,250

19,551,598 (83.79%)

HKΔ4 12 hpi

22,159,388 (98.06%)

2,769,923,500

19,341,040 (87.28%)

HKΔ4 20 hpi

23,345,520 (97.96%)

2,918,190,000

18,435,407 (78.97%)

A. longipes

Unigene number

N50 (bp)

Average length (bp)

22,435

2,383

1,314

Back to article page