Table 2 Regions consisting of overlapping windows each containing at least one SNP with XtX score >32.2 or at least one Bfmc score >15 identified by BayPass whole genome scan.
From: Species composition and environmental adaptation of indigenous Chinese cattle
Position | XtX | Bfmc | Closest RefSeq gene | |||
|---|---|---|---|---|---|---|
env. PC1 | env. PC2 | env. PC3 | morpho. PC1 | |||
BTA02: 61.5–62.5 | — | 61.89 (25.50; 2) | — | — | — | LCT (61.87–61.92) |
BTA03: 33.0–34.5 | — | 33.98 (15.14; 2) | — | — | — | AMPD2 (33.93–3394) |
BTA03: 46.5–48.0 | — | 47.34 (24.04; 2) | — | — | — | PAPSS1 (47.27–47.67) |
BTA03: 90.0–91.5 | — | 90.55 (22.17; 3) | — | — | — | PLPP3 (90.19–90.27) |
BTA04: 30.0–31.0 | — | 30.04 (22.70; 2) | — | — | — | SP4 (30.32–30.41) |
BTA05: 17.5–19.0 | — | 18.02 (35.87; 2) | — | — | — | TMTC3 (17.99–18.05) |
BTA05: 69.5–71.0 | 70.34 (64.00; 2) | 70.31 (17.19; 1) | — | 70.34 (18.64; 1) | 70.34 (26.72; 3) | RFX4 (70.22–70.39) |
BTA06: 17.5–19.0 | 18.29 (44.13; 2) | — | — | — | — | LEF1 (18.33–18.45) |
BTA06: 39.5–41.5 | 39.84 (40.33; 3) | 41.25 (17.72; 1) | — | 39.84 (25.61; 1) | 40.33 (20.22; 1) | SLIT2 (41.24–41.64) |
BTA06: 46.0–47.5 | — | 46.79 (26.40; 2) | — | — | — | SELL1L3 (46.79–46.88) |
BTA06: 73.5–75.0 | — | 74.35 (22.14; 2) | — | — | — | IGFBP7 (74.07–74.15) |
BTA06: 105.0–106.5 | — | 105.63 (16.52; 2) | — | — | — | STK32B (105.52–105.89) |
BTA08: 59.5–60.5 | — | — | — | — | 60.00 (16.98; 2) | UNC13B (59.79–60.01) |
BTA08: 81.0–82.0 | 81.57 (34.93; 1) | 81.57 (23.66; 2) | — | — | — | GAS1 (81.50–81.51) |
BTA08: 111.5–113.0 | — | 112.13 (22.78; 2) | — | — | — | PHF19 (112.14–112.16) |
BTA10: 31.0–32.5 | 31.66 (33.71; 2) | — | — | — | — | COPS5 (31.70–31.70) |
BTA11: 9.00–10.5 | — | 9.91 (20.55; 2) | — | — | — | SEMA4F (9.94–9.97) |
BTA11: 22.5–24.5 | — | 23.09 (45.17; 3) | — | 23.80 (16.19; 1) | — | NA |
BTA12: 34.0–35.5 | — | 34.68 (20.72; 2) | — | — | — | TNFRSF19 (34.67–34.76) |
BTA12: 78.0–79.0 | — | 78.61 (16.86; 2) | — | — | — | RAP2A (78.51–78.55) |
BTA13: 45.5–48.5 | 47.02 (44.22; 10) | 46.08 (28.49; 1) | — | 48.09 (45.17; 1) | — | DIP2C (46.89–47.18); PROKR2 (47.91–4792) |
BTA13: 50.5–52.0 | 51.42 (36.09; 2) | — | — | — | 50.7 (16.42; 2) | ADRA1D (51.37–51.39); UBE2E3 (50.38–50.65) |
BTA13: 53.0–54.5 | 53.81 (39.73; 2) | — | — | — | — | SIRPB1 (53.90–53.94) |
BTA15: 52.0–53.5 | — | 52.80 (25.87; 2) | — | — | — | CLPB (52.66–52.80) |
BTA20: 67.5–69.0 | — | 68.40 (17.23; 2) | — | — | — | ADAMTS16 (67.94–68.14) |
BTA21: 27.5–29.0 | — | 28.20 (27.59; 2) | — | — | — | KLF13 (28.22–28.22) |
BTA24: 39.5–40.5 | — | 40.49 (20.22; 2) | — | — | — | LAMA1 (40.35–40.51) |
