Table 1 SNPs in CAP-resistant strain.

From: Integrated Genomic and Proteomic Analyses of High-level Chloramphenicol Resistance in Campylobacter jejuni

Reference

Alteration

Gene

Function

Putative protein/RNA

Mutation type

Amino acid change

G

A

cje0035, cje0036

intergenic

   

T

C

cje0036

downstream

   

G

A

cje0075

CDS

transcription termination/antitermination protein NusG

nonsynonymous

c.G433A:p.E145K

G

A

cje0220

CDS

NOL1/NOP2/sun family protein

nonsynonymous

c.G331A:p.G111S

G

A

cje0275

CDS

peptidyl-prolyl cis-trans isomerase

nonsynonymous

c.G1483A:p.G495R

G

A

cje0289

CDS

putative ribosomal pseudouridine synthase

nonsynonymous

c.G494A:p.S165N

G

A

cje0332,cje0333

intergenic

   

T

C

cje0333

upstream

 

A

G

cje0473, cje0474, cje0475

upstream, downstream

  

G

T

cje0766

CDS

NAD(P)H-dependent oxidoreductase

stopgain

c.G160T:p.E54X

C

T

cje0886

CDS

30 S ribosomal protein S2

nonsynonymous

c.G118A:p.D40N

C

T

cje1065

CDS

hypothetical protein

synonymous

c.G423A:p.E141E

C

T

cje1119

CDS

putative cytochrome P450

nonsynonymous

c.G221A:p.S74N

C

T

cje1167

CDS

radical SAM protein

nonsynonymous

c.G113A:p.R38K

C

T

cje1427

CDS

50 S ribosomal protein L4

nonsynonymous

c.G221A:p.G74D

C

T

cje1432

CDS

16 S rRNA dimethyltransferase

nonsynonymous

c.G769A:p.D257N

G

A

cje1486, cje1487

intergenic

23 s rRNA

.

c.G2073A

G

A

cje1496

CDS

GTP-binding protein TypA

nonsynonymous

c.C1561T:p.L521F

A

-

cje1516

CDS

RNA polymerase sigma factor FliA

nonsynonymous

G

A

cje1554, cje1555

upstream, downstream

.

.

G

A

cje1562

CDS

ATP synthase subunit alpha

nonsynonymous

c.G1237A:p.G413R

C

T

cje1650

CDS

amidophosphoribosyltransferase

nonsynonymous

c.G268A:p.A90T

A

G

cje1728

CDS

rod shape-determining protein MreB

nonsynonymous

c.A115G:p.I39V

C

T

cje1811

CDS

DNA-binding response regulator

nonsynonymous

c.G403A:p.E135K

C

T

cje1821

CDS

CmeB

nonsynonymous

c.G2003A:p.G668E

G

A

cje1821

CDS

CmeB

nonsynonymous

c.C1871T:p.A624V

G

A

cje1821

CDS

CmeB

nonsynonymous

c.C425T:p.S142F

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