Table 3 Proteins identified by LC-MS/MS with the most significant changes in their expression levels in dry eye (DE), Meibomian gland dysfunction (MGD), and control (CT) groups.

From: Tear proteome analysis in ocular surface diseases using label-free LC-MS/MS and multiplexed-microarray biomarker validation

UniProt

Protein name

Gene name

FDR (q-value)

FOLD

Highest mean

Lowest mean

Number of peptides

P01024

Complement C3

C3

5.66E-05

1.86

DE

CT

6

P06703

Protein S100-A6

S100A6

5.40E-08

2.26

DE

CT

2

P05109

Protein S100-A8

S100A8

1.68E-04

2.15

DE

CT

4

P00450

Ceruloplasmin

CP

3.76E-02

3.25

DE

CT

2

P05090

Apolipoprotein D

APOD

8.68E-03

3.85

DE

CT

3

P19652

Alpha-1-acid glycoprotein 2

ORM2

1.69E-04

2.13

DE

CT

4

P10599

Thioredoxin

TXN

4.14E-04

1.61

DE

MGD

3

P01857

Ig gamma-1 chain C region

IGHG1

4.14E-04

1.61

DE

MGD

10

P14555

Phospholipase A2, membrane-associated

PLA2G2A

1.77E-02

3.13

DE

MGD

7

P01009

Alpha-1-antitrypsin

SERPINA1

4.05E-03

1.98

DE

MGD

5

P03973

Antileukoproteinase

SLPI

2.32E-02

3.59

DE

MGD

3

P04083

ANXA1 protein

ANXA1

1.46E-03

1.83

MGD

CT

2

P10909

Clusterin

CLU

1.52E-02

2.68

MGD

CT

8

P02763

Alpha-1-acid glycoprotein 1

ORM1

1.75E-02

1.49

MGD

CT

4

P22079

Lactoperoxidase

LPO

1.73E-02

2.40

MGD

DE

2

Q99935

Proline-rich protein 1

PROL1

5.82E-03

1.64

CT

DE

8

O95968

Secretoglobin family 1D member 1

SCGB1D1

2.00E-02

1.63

CT

DE

5

O75556

Mammaglobin-B

SCGB2A1

3.56E-03

1.65

CT

DE

11

P31025

Lipocalin-1

LCN1

3.61E-02

1.81

CT

DE

11

P01036

Cystatin-S

CST4

3.56E-03

1.65

CT

DE

6

P12273

Prolactin-inducible protein

PIP

3.69E-02

1.9

CT

DE

8

P81605

Dermcidin

DCD

6.27E-03

2.55

CT

DE

2

P02814

Submaxillary gland androgen-regulated protein

PROL3

3.44E-02

1.61

CT

DE

4

Q08380

Galectin-3-binding protein

LGALS3BP

4.61E-02

2.64

CT

DE

2

Q9GZZ8

Extracellular glycoprotein lacritin

LACRT

2.19E-02

1.83

CT

DE

6

Q16378

Proline-rich protein 4

PRR4

3.23E-02

2.02

CT

DE

4

  1. The fold-values shown for each protein refer to the ratios between the group with the highest mean expression values (Highest Mean) and the group with the lowest mean expression values (Lowest Mean). The number of peptides identified was filtered using the PeptideProphet probability threshold of 0.95. FDR = False discovery rate.