Table 3 Summary of the transcriptome database generated from one lane of Illumina sequencing of N. pseudonarcissus ‘King Alfred’ bulbs.

N. pseudonarcissus ‘King Alfred’
Total number of raw paired reads^a	73 081 603
Total number of surviving paired reads trimmed^b	66 054 792
Total number of surviving paired reads normalized^c	10 523 999
Number of transcripts^d	195 347
Number of components^e	98 332
Number of annotated transcripts^f	11 708

^aNumber of Paired Reads obtained from the sequencer.
^bNumber of Remaining Paired Reads after the trimming step.
^cNumber of Remaining Paired Reads after the normalization step.
^dNumber of transcripts:Trinity has created a list of transcripts representing the transcriptome isoforms.
^eThe transcripts are grouped in components loosely representing genes. Transcript names are prefixed by the component/gene name e.g. transcripts c115_g5_i1 and c115_g5_i2 are derived from the same isolated de Bruijn graph and therefore share the same component/gene number c115_g5.
^fEach transcript has been aligned against the uniprot_sprot.trinotate_v2.0.pep protein database using blastx program from the NCBI BLAST family.

Quick links

Search