Table 2 Bacterial strains, bacteriophages and plasmids used in this study.

From: The bacterial Type III toxin-antitoxin system, ToxIN, is a dynamic protein-RNA complex with stability-dependent antiviral abortive infection activity

Name

Description

Source

Bacterial strains

Escherichia coli DH5α

K-12 strain: F Φ80lacZΔM15 Δ(lacZYA-argF) U169 recA1 endA1 hsdR17(rK mK+) phoA supE44 λ thi-1 relA1 gyrA96

Invitrogen

Pectobacterium atrosepticum SCRI1043

Wild-type environmental isolate

33

Serratia marcescens ATCC39006

Wild-type environmental isolate, carbapenem+, prodigiosin+

34

Bacteriophage

ΦCDA [1–29]

Uncharacterised environmental P. atrosepticum phage, sewage isolate

This study

ΦCHI14[a-x]

Escape mutants of S. marcescens 39006 phage ΦCHI14

23

Plasmids

pFLS6

toxIN-Y115A-FLAG in pBR322, ApR

8

pFLS90

toxIN locus in pBS KSII+, ApR

This study

pMJ4

toxIN-FLAG in pBR322, ApR

15

pTA46

toxIN in pBR322, ApR

7

pTA47

toxIN-FS in pBR322, ApR

7

pTA110

toxI in pBS KSII+ for antisense transcription, ApR

9

pTRB57

toxIN-FS-FLAG in pBR322, ApR

15