Table 6 The large repeated sequences in the eight Fritillaria cp genomes with different hamming distance.
From: Chloroplast genomic resources for phylogeny and DNA barcoding: a case study on Fritillaria
Species | Hamming Distance = 3 | Hamming Distance = 2 | Hamming Distance = 1 | Hamming Distance = 0 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
F | R | C | P | all | F | R | C | P | all | F | R | C | P | all | F | P | all | |
F. cirrhosa | 17 | 3 | 1 | 19 | 40 | 11 | 3 | 0 | 14 | 28 | 4 | 0 | 0 | 9 | 13 | 1 | 3 | 4 |
F. eduardii | 15 | 2 | 1 | 18 | 36 | 11 | 1 | 0 | 15 | 27 | 9 | 0 | 0 | 11 | 20 | 5 | 6 | 11 |
F. hupehensis | 19 | 1 | 1 | 18 | 39 | 12 | 1 | 0 | 13 | 26 | 6 | 0 | 0 | 9 | 15 | 0 | 4 | 4 |
F. karelinii | 15 | 4 | 0 | 18 | 37 | 9 | 3 | 0 | 11 | 23 | 6 | 1 | 0 | 7 | 15 | 3 | 6 | 9 |
F. meleagroides | 22 | 9 | 4 | 18 | 53 | 11 | 4 | 2 | 12 | 29 | 8 | 0 | 1 | 10 | 19 | 5 | 8 | 13 |
F. persica | 11 | 1 | 1 | 15 | 28 | 5 | 1 | 0 | 10 | 16 | 3 | 0 | 0 | 7 | 10 | 0 | 4 | 5 |
F. taipaiensis | 16 | 4 | 1 | 21 | 42 | 10 | 2 | 0 | 16 | 28 | 4 | 0 | 0 | 10 | 14 | 0 | 4 | 4 |
F. unibracteata var. wabuensis | 17 | 5 | 2 | 20 | 44 | 10 | 3 | 0 | 15 | 28 | 4 | 0 | 0 | 10 | 14 | 0 | 4 | 4 |
Total repeated sequences | 132 | 29 | 11 | 147 | 319 | 79 | 18 | 2 | 106 | 205 | 44 | 1 | 1 | 73 | 120 | 14 | 39 | 54 |
