Table 2 Genes showing common upregulation in response to NDV in both Fayoumi and Leghorn chickens.

From: Transcriptome Analysis in Spleen Reveals Differential Regulation of Response to Newcastle Disease Virus in Two Chicken Lines

Ensembl Gene ID

Gene Name

Log2FC (NDV vs. Control) (Spleen/Trachea)

Leghorn 2 dpi

Fayoumi 2 dpi

Leghorn 6 dpi

Fayoumi 6 dpi

ENSGALG00000016400

RSAD2

2.35*/6.62*

1.26*/6.19*

1.19*/2.45*

0.50/1.86

ENSGALG00000045085

IFIT5

3.11*

1.21*

1.28*

0.57

ENSGALG00000016142

Mx

3.61*/4.31*

1.18*/4.00*

1.87*/1.98*

0.59/1.72

ENSGALG00000038140

DDX60

2.43*

1.08*

1.26

1.08

ENSGALG00000028982

CMPK2

2.75*/3.77*

1.32*/3.70*

1.06/1.10

0.5/1.11

ENSGALG00000009479

SAMD9L

2.48*/7.63*

1.21*/6.65*

1.17/3.95*

0.32/3.9*

ENSGALG00000013723

OASL

2.96*

1.07*

1.16

0.44

ENSGALG00000013057

USP18

1.78*/4.55*

0.98*/4.37*

0.66/1.54*

0.35/1.69*

ENSGALG00000004859

ZNFX1

1.48*/2.26*

0.76*/1.92*

0.61/0.62

0.29/0.60

ENSGALG00000031916

ZP1

1.14*

0.65*

0.20

0.05

ENSGALG00000001558

MOV10

1.44*/3.68*

0.62*/3.30*

0.28/1.46*

0.20/1.23

ENSGALG00000003144

TRIM25

1.19*/2.25*

0.60*/2.01*

0.24/0.81

0.19/0.67

ENSGALG00000014603

C1S

0.82*/2.03*

0.61*/1.47*

0.56/0.74

0.23/0.62

ENSGALG00000045511

PARP9

0.88*

0.58*

0.10

−0.04

ENSGALG00000010560

EIF2AK2

0.92*/2.59*

0.51*/2.46*

0.40/0.88

0.20/0.57

  1. Note: Log2FC means Log2 fold change. *Indicates that differential expression is significant (false discovery rate <0.05). Genes with observed data in trachea in our previous study13 have their log2FC shown as spleen/trachea.
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