Table 2 Summary of key duodenal OTUs characteristics generated by Venn diagram and NSC analysis.

From: Interaction of genotype and diet on small intestine microbiota of Japanese quail fed a cholesterol enriched diet

 

RC

SC

Over-abundant

Uncl. Streptococcaceae (255359)

Uncl. Streptophyta (4420570)

Uncl. Escherichia (114510)

Bacteroides fragilis (3474081)

Uncl. Lachnospiraceae (158971)**

Uncl. Enterococcus (839152)

Uncl. Sinobacteraceae (100307)

Uncl. Lactobacillus (137580)

Uncl. Sphingomonas (4449609)

Uncl. Caulobacteraceae (4353264)

Uncl. Afipia (92573)

Unique

Bacteroides ovatus (2563561)

Pseudomonas stutzeri (4312845)

Uncl. Ruminococcaceae (134174)

Uncl. Ruminococcus (136507)†

Lactobacillus reuteri (137043)†*

 

RE

SE

Over-Abundant

Uncl. Lactobacillaceae (292057)‡§

Uncl. Lachnospiraceae (130773)

Uncl. Coprobacillaceae (592616)

Uncl. Ruminococcaceae (306633)

Uncl. Ruminococcus (182245)

Unique

Uncl. RF39 (235065)

Uncl. Sphingomonas (582921)†

Uncl. Ruminococcaceae (157546)

Uncl. Coprobacillaceae (364722)

Uncl. Ruminococcus (3438642)†

Uncl. Ruminococcus (191273)†

Uncl. Ruminococcus (548503)†

Uncl. Lachnospiraceae (NCR37)†

  1. ‡Also found as over-abundant in RE ileum.
  2. †Unique and over-abundant.
  3. *Also found as Unique in RC ceca24.
  4. **Also found as Abundant in SE ceca24.
  5. §Also found as Rare in RE ceca and as Abundant in SC ceca24.
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