Table 3 KEGG pathways analysis using DAVID of genes upregulated during pregnancy.

From: Transcriptomic changes in the pre-implantation uterus highlight histotrophic nutrition of the developing marsupial embryo

Pathway accession

Pathway Term

Count

%

P-Value

Genes

Fold Enrichment

Benjamini-adjusted P-value

FDR

mdo01100

Metabolic pathways

40

15.1

6.8E-07

GALNT3, ALAD, SC5D, TALDO1, NAGS, ADPGK, HSD3B7, PAFAH2, EHHADH, ALG2, HMGCS1, GMPPB, ATP6V0C, CEPT1, PGP, ACSL1, DHCR7, HDC, ACAD8, IPMK, GALNT12, HSD17B7, MOCS2, PLA2G10, SLC33A1, PDXP, DPAGT1, IDO1, MGAT2, CYP27A1, MLYCD, SQLE, BCO1, AGXT2, PLA2G3, RDH16, AKR1D1, ALG12, PC, MDH1

2.2

1.03E-04

0.0

mdo00100

Steroid biosynthesis

4

1.5

2.9E-03

SC5D, SQLE, DHCR7, HSD17B7

13.6

1.94E-01

3.4

mdo01130

Biosynthesis of antibiotics

10

3.8

4.0E-03

SC5D, PGP, TALDO1, ADPGK, PAFAH2, SQLE, EHHADH, HMGCS1, HSD17B7, MDH1

3.2

1.82E-01

4.7

mdo00120

Primary bile acid biosynthesis

3

1.1

1.9E-02

CYP27A1, HSD3B7, AKR1D1

13.8

5.13E-01

20.4

mdo00565

Ether lipid metabolism

4

1.5

2.6E-02

CEPT1, PLA2G10, PAFAH2, PLA2G3

6.1

5.52E-01

27.3

mdo01200

Carbon metabolism

6

2.3

2.8E-02

PGP, TALDO1, ADPGK, EHHADH, PC, MDH1

3.5

5.07E-01

28.5

mdo04142

Lysosome

6

2.3

3.5E-02

ATP6V0C, NAGPA, MFSD8, AP3D1, CD164, AP4S1

3.3

5.34E-01

34.5

mdo04146

Peroxisome

5

1.9

3.8E-02

ACSL1, MLYCD, EHHADH, GNPAT, SLC27A2

3.9

5.23E-01

37.4

mdo04141

Protein processing in endoplasmic reticulum

7

2.6

4.0E-02

HYOU1, SYVN1, PDIA6, HSPA5, DNAJC3, LMAN1, SEC62

2.7

4.96E-01

38.7

mdo00510

N-Glycan biosynthesis

4

1.5

4.1E-02

MGAT2, ALG2, DPAGT1, ALG12

5.2

4.69E-01

39.4

mdo03060

Protein export

3

1.1

5.2E-02

SRPRA, HSPA5, SEC62

8.1

5.19E-01

47.1

mdo03320

PPAR signaling pathway

4

1.5

7.8E-02

ACSL1, CYP27A1, EHHADH, SLC27A2

4.0

6.39E-01

62.0

mdo00410

beta-Alanine metabolism

3

1.1

8.2E-02

MLYCD, EHHADH, CARNS1

6.2

6.28E-01

63.9

  1. P-values are modified Fisher’s Exact P-Values for gene-enrichment analysis (where P = 0 represents perfect enrichment) and threshold 0.1, and only pathways with membership of at least two upregulated genes are shown. FDR = False discovery rate.