Table 1 Genomes of 20 oomycetes and 2 diatoms used in this study. Description of each genome includes species, strain, host specificity (plant, animal or human), genome size, contigs, N50, G + C content, coding sequences and data source. An asterisk indicates the two diatoms that serve as outgroups.

From: Probing the Phylogenomics and Putative Pathogenicity Genes of Pythium insidiosum by Oomycete Genome Analyses

Species

Strain

Host

Genome size (Mb)

Number of contigs

N50 (bp)

G + C content (%)

Number of CDS

Average CDS (bp)

Total CDS length (bp)

CDS density (%)

Source

Albugo laibachii

Nc14

Plant

32.8

3,827

69,384

44.3

13,804

1,772

24,457,143

75

http://protists.ensembl.org

Albugo candida

2VRR

Plant

34.6

252

375,021

43.2

15,824

973

15,389,934

45

http://fungidb.org

Hyaloperonospora arabidopsis

Emoy2

Plant

78.9

3,044

332,402

47.2

14,321

1,105

15,826,807

20

http://protists.ensembl.org

Phytophthora capsici

LT1534

Plant

64.0

917

705,730

50.4

19,805

1,253

24,818,348

39

http://genome.jgi.doe.gov

Phytophthora infestans

T30–4

Plant

228.5

4,921

1,588,622

51.0

18,138

1,527

27,688,358

12

http://www.broadinstitute.org

Phytophthora parasitica

INRA-310

Plant

82.3

708

888,348

49.5

27,941

1,762

49,229,193

60

http://www.broadinstitute.org

Phytophthora cinnamomi

CBS 144.22

Plant

77.9

1,314

264,472

53.9

26,131

1,303

34,043,544

44

http://fungidb.org

Phytophthora sojae

P6497

Plant

86.0

1,810

462,795

54.4

16,989

1,618

27,494,907

32

http://www.broadinstitute.org

Phytophthora ramorum

pr102

Plant

66.6

2,576

308,042

53.9

14,394

1,629

23,440,930

35

http://www.broadinstitute.org

Pythium vexans

DAOM BR484

Plant

33.8

3,685

29,235

58.9

11,958

1,767

21,128,509

62

http://pythium.plantbiology.msu.edu

Pythium irregulare

DAOM BR486

Plant

42.9

5,887

23,217

53.8

13,805

1,707

23,568,848

55

http://pythium.plantbiology.msu.edu

Pythium ultimum

DAOM BR144

Plant

44.9

975

837,833

52.3

12,614

1,468

18,515,581

41

http://www.broadinstitute.org

Pythium iwayamai

DAOM BR242034

Plant

43.2

11,542

11,008

55.1

14,875

1,542

22,938,245

53

http://pythium.plantbiology.msu.edu

Pythium arrhenomanes

ATCC 12531

Plant

44.6

10,978

9,767

56.9

13,805

1,541

21,272,330

48

http://pythium.plantbiology.msu.edu

Pythium aphanidermatum

DAOM BR444

Human, Plant

35.8

1,774

37,384

53.8

12,312

1,618

19,925,113

56

http://pythium.plantbiology.msu.edu

Pythium insidiosum

Pi-S

Human, Animal

53.2

1,192

146,252

57.9

14,962

2,144

32,074,099

60

Accession: BBXB01000001–1192

Aphanomyces astaci

APO3

Animal

75.8

835

657,536

49.8

26,259

2,160

56,712,510

75

http://fungidb.org

Aphanomyces invadans

NJM9701

Animal

71.4

481

1,130,244

54.2

20,816

2,096

43,637,220

61

http://fungidb.org

Saprolegnia declina

VS20

Animal

62.8

390

602,571

58.6

18,229

1,779

32,427,679

52

http://www.broadinstitute.org

Saprolegnia parasitica

CBS 223.65

Animal

53.1

1,442

280,942

58.5

20,088

1,522

30,575,773

58

http://www.broadinstitute.org

Phaeodactylum tricornutum*

CCAP1055–1

—

26.1

33

945,026

48.9

10,025

1,621

16,248,565

62

http://genome.jgi-psf.org

Thalassiosira pseudonana*

CCMP1335

—

31.3

27

1,992,434

46.9

11,390

1,745

19,880,678

64

http://genome.jgi-psf.org

Back to article page