Table 1 Standard HCV Genotype EQA panel (Quality Control for Molecular Diagnostics, Glasgow, Scotland, UK). NS5B contig characteristics provided by the Quality Control Report and Pathology Report in the Sentosa SQ HCV Genotyping Assay are shown.
From: A novel standardized deep sequencing-based assay for hepatitis C virus genotype determination
Panel member | Genotype/subtype | HCV RNA level (IU/mL) | NS5B Contig characteristics | ||
|---|---|---|---|---|---|
Median Coverage | No of reads | Length | |||
HCVGT17-01 | 4a | >10,000 | 1,079 | 3,631 | 682 |
HCVGT17-02 | 2b | >10,000 | 3,072 | 9,473 | 576 |
HCVGT17-03 | 6a | >10,000 | 4,605 | 16,670 | 680 |
HCVGT17-04 | 3a | >10,000 | 11,875 | 44,296 | 682 |
HCVGT17-05 | 1b | >10,000 | 13,585 | 56,598 | 683 |
HCVGT17-06 | negative | >10,000 | — | — | — |
HCVGT17-07 | 1a | >10,000 | 8,807 | 34,294 | 683 |
HCVGT17-08 | 5a | >10,000 | 8,074 | 29,548 | 681 |
