Figure 3

Intermediate-size indels detected by the three methods for NA18943. Venn diagram showing the overlap of the indels detected by all four methods: IMSindel, GATK HaplotypeCaller, PINDEL and ScanIndel in NA18943 (a), NA18948 (b) and NA12878 (c). The numbers of indel detected in the each method categorized by size in NA18943 (d), NA18948 (e) and NA12878 (f).