Table 1 SNPs identified in F3H and in LDOX genes across the 20 grapevine varieties.

From: Alternative SNP detection platforms, HRM and biosensors, for varietal identification in Vitis vinifera L. using F3H and LDOX genes

 

Grapevine Code

Nucleotide position

4

47

291

1039

1040

1065

1157

1318

1381

1464

437

Reference

T

C

T

A

A

C

G

C

A

A

C

F3H

AB

*

Y

*

W

W

*

*

Y

*

*

LDOX

T

CS

G

*

*

*

*

*

C

*

G

T

Y

Ch

K

*

*

*

*

*

S

*

R

W

Y

DT

*

*

W

*

*

M

*

*

*

*

*

FP

K

Y

*

W

W

*

S

Y

R

W

Y

Gou

*

*

W

*

*

M

*

*

*

*

Y

MF

*

Y

W

W

W

M

*

Y

*

*

*

M

K

*

W

*

*

M

S

*

R

W

*

MG

K

*

*

W

W

*

*

Y

*

*

Y

Ruf

*

Y

*

W

W

*

*

Y

*

*

*

Sou

G

*

*

*

*

*

C

*

G

T

Y

TA

K

*

*

*

*

*

S

*

R

W

*

TB

*

*

W

*

*

M

*

*

*

*

Y

TFi

*

Y

W

W

W

M

*

Y

*

*

*

TR

*

*

A

*

*

A

*

*

*

*

Y

TC

G

*

*

*

*

*

S

*

R

W

*

TBr

K

Y

*

W

W

*

S

Y

R

W

Y

TF

K

*

*

*

*

*

S

*

R

W

Y

TN

K

*

*

*

*

*

S

*

R

W

Y

Vio

*

Y

*

W

W

*

*

Y

*

*

*

  1. Nucleotide Code: A (Adenine); C (Cytosine); T (Thymine); G (Guanine); M (A or C); R (A or G); W (A or T); S (C or G); Y (C or T) and K (G or T).
  2. *Equal to the described reference genotype.
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