Table 1 Genome statistics of Cadophora sp. DSE1049 and Periconia macrospinosa DSE2036.
Genome Assembly | Cadophora sp. | Periconia macrospinosa | |
|---|---|---|---|
Genome Assembly size (Mbp) | 70,46 | 54,99 | |
Sequencing read coverage depth | 79,2x | 139,4x | |
# of contigs | 1294 | 2470 | |
# of scaffolds | 1193 | 1566 | |
# of scaffolds > = 2Kbp | 1092 | 1217 | |
Scaffold N50 | 71 | 101 | |
Scaffold L50 (Mbp) | 0,24 | 0,14 | |
# of gaps | 101 | 904 | |
% of scaffold length in gaps | 0,001 | 0,018 | |
Three largest Scaffolds (Mbp) | 1,38; 1,24; 1,23 | 1.32, 0.77, 0.70 | |
External gene models/length (bp) | |||
Average | gene | 1583 | 1564 |
transcript | 1401 | 1418 | |
exon | 460 | 537 | |
intron | 91 | 91 | |
Median | gene | 1358 | 1340 |
transcript | 1200 | 1202 | |
exon | 292 | 338 | |
intron | 58 | 61 | |
Description | |||
Average | protein length (aa) | 409 | 411 |
exons per gene | 3,04 | 2,64 | |
# of gene models | 22766 | 18750 | |
Median | protein length (aa) | 338 | 337 |
exons per gene | 3 | 2 | |
CEGMA | % | 100 | 100 |
ESTs | |||
# sequences total | 39120 | 40915 | |
# mapped to genome | 38428 | 38019 | |
% mapped to genome | 0,982 | 0,929 | |
