Table 2 Cis-regulatory elements predicted in promoter region of HvSPL genes.

From: Genome-wide analysis of the SPL/miR156 module and its interaction with the AP2/miR172 unit in barley

Gene

Light Response

Growth and Development

Stress Response

Hormone Response

HvSPL3

Box II –like sequence, CATT-motif, GA-motif, GAG-motif,Sp1

5UTR Py-rich stretch, AC-II,CCGTCC-box, GCN4_motif, Skn-1_motif, circadian

A-box, ARE, HSE,MBS, TC-rich repeats, box E

CGTCA-motif, TCA-element, TGACG-motif

HvSPL11

ATC-motif, BoxI, GAG-motif, GC-motif, I-box,MNF1,Sp1

CAT-box, GCN4_motif, Skn-1_motif, circadian

ARE

CGTCA-motif, TCA-element, TGA-element, TGACG-motif

HvSPL17

ATCC-motif, Box I, CATT-motif, G-Box, GA-motif, GAG-motif, Gap-box,Sp1

HD-Zip 3,Skn-1_motif, plant_AP-2-like

ARE, HSE, TC-rich repeats

TGA-element

HvSPL13

ACE,ATCT-motif, Box 4,GA-motif, LAMP-element

ATGCAAAT motif, GCN4_motif, O2-site

Box-W1, HSE, W box

CGTCA-motif, EIRE, TGACG-motif

HvSPL7

ACE,CG-motif, G-box, GATA-motif, GC-motif, I-box,Sp1,box II

CCGTCC-box, RY-element, Skn-1_motif

A-box, LTR, box S

ABRE, CGTCA-motif, TATC-box, TGACG-motif

HvSPL7A

ATC-motif, ATCT-motif, G-Box, GA-motif, GAG-motif, GC-motif, Sp1,TCT-motif

Skn-1_motif

box S

ABRE

HvSPL15

ACE,G-Box, GC-motif,Sp1

AC-II,CAT-box, CCGTCC-box, O2-site,dOCT

A-box, ARE, MBS, TC-rich repeats

ABRE, motif Iib

HvSPL6

ACE, GC-motif, MNF1, Pc-CMA2c, Sp1,TCT-motif

CAT-box, CCAAT-box, CCGTCC-box, OCT

A-box, Box-W1, TCCACCT-motif, W box

CGTCA-motif, TGA-element, TGACG-motif

HvSPL1

ACE,AE-box, Box 4,G-box, GT1-motif,I-box,MRE,Sp1, TCT-motif

O2-site, Skn-1_motif, circadian

Box-W1, MBS, W box

AuxRE, TCA-element

HvSPL9

GC-motif, L-box, MNF1, Sp1

AC-I,AC-II, CAT-box, GCN4_motif,O2-site, Skn-1_motif, plant_AP-2-like

Not found

ABRE, CGTCA-motif, GARE-motif, TGACG-motif, motif IIb

HvSPL16

CATT-motif, G-Box,GAG-motif, I-box, SpI

5UTR Py-rich stretch, AC-I,CAT-box, Skn-1_motif

HSE, TCCACCT-motif

ABRE

HvSPL18

G-Box,GAG-motif, GT1-motif, I-box,Sp1, TCCC-motif

CCGTCC-box, GCN4_motif, HD-Zip 1,HD-Zip 2, RY-element, circadian, plant_AP-2-like

A-box, ARE, TC-rich repeats

ABRE

HvSPL23

ATCC-motif, G-box,GC-motif, MNF1,Sp1

5UTR Py-rich stretch, CCAAT-box, Skn-1_motif

Box-W1, LTR, TC-rich repeats, W box

GARE-motif, motif IIb

HvSPL21

ACE, Box I, GT1-motif, TCCC-motif

ATGCAAAT motif, GCN4_motif, Skn-1_motif, TA-rich region

TC-rich repeats

CGTCA-motif, ERE, TCA-element, TGACG-motif

HvSPL 22

Box II,G-Box, GC-motif, Sp1, TATCCAT/C-motif

CCAAT-box, CCGTCC-box, Skn-1_motif

A-box, Box-W1, HSE,W box

CGTCA-motif, TATC-box, TGA-element, TGACG-motif

HvSPL 20

C-box,G-box, GC-motif,Sp1, chs-Unit 1 m1

AC-II,CCGTCC-box, GCN4_motif, O2-site, Skn-1_motif

A-box, ARE, Box-W1, MBS, TCCACCT-motif, W box

ABRE, CGTCA-motif, GARE-motif, P-box,TGACG-motif

HvSPL 8

G-Box, GATA-motif, chs-CMA2a

Circadian

Box-W1,MBS, W box

TCA-element