Table 2 Genome – wide associations to determine power of the cat DNA array.

From: Applications and efficiencies of the first cat 63K DNA array

GWAS

MOI

Cases

Controls

ʎ

Chr.

Position

Haplotype length

P raw

P genome

SNPs post mperm

Dense *,†

AR

33

81

1.06

C1

218,100,114

NA

1.30e−20

0.00001

1

- Burmese

AR

30

56

1.46

C1

218,200,114

~150 Kb

3.79e−16

0.00002

15

- Birman

AR

60

41

1.24

C1

218,100,114

~60 Kb

8.08e−20

0.00002

13

Long hair*

AR

32

22

1.17

B1

140,077,554

~150 Kb

8.20e−10

0.00010

2

  Color (cs)*

AR

21

28

1.41

D1

46,341,460

~1 Mb

2.00e−9

0.00040

10

  Orange

X

24

69

1.11

X

107,777,134

~1.5 Mb

1.20e−20

0.00002

7

  1. *Causative variant is present on the array. †The power to detect Dense was first considered for random bred cats and then for breeds in which the trait is under selection.
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