Table 1 All types of experiments that can be interpreted by the set of expert rules.
From: A logic-based method to build signaling networks and propose experimental plans
Type of the conclusion | Method | Category | Disruptor | Detection method | Experiment type | Experimental result predicate | Conceptual experiment type predicate |
|---|---|---|---|---|---|---|---|
Modulation | Dosage | Enzymatic assay | Radio | 25EA | ea(X, S1, S2, E) | simpleEa(X, S1, S2, E) | |
Antagonist | 50ACPEA | acpea(X, S1, S2, I, E) | complexEa(X, S1, S2, I, E) | ||||
Inhibitor | 50ICPEA | icpea(X, S1, S2, I, E) | |||||
siRNA | 75SCPEA | scpea(X, S1, S2, I, E) | |||||
Phosphorylation assay | Antibody | 25PA | pa(X, Y, A, E) | simplePa(X, Y, A, E) | |||
Radio | 25PRA | pra(X, Y, A, E) | |||||
Antagonist | Antibody | 50ACPPA | acppa(X, Y, A, I, E) | complexPa(X, Y, A, I, E) | |||
Inhibitor | 50ICPPA | icppa(X, Y, A, I, E) | |||||
Radio | 50ICPPRA | icppra(X, Y, A, I, E) | |||||
siRNA | Antibody | 75SCPPA | scppa(X, Y, A, I, E) | ||||
ELISA | Antibody | 25ELISA | elisa(X, A, E) | simpleElisa(X, A, E) | |||
Inhibitor | 50ICELISA | icelisa(X, A, I, E) | complexElisa(X, A, I, E) | ||||
siRNA | 75SCELISA | scelisa(X, A, I, E) | |||||
Radio-immunology Experiment | Radio | 25RIA | ria(X, A, E) | simpleRia(X, A, E) | |||
Inhibitor | 50ICRIA | icria(X, A, I, E) | complexRia(X, A, I, E) | ||||
Western Blot | Antibody | 25WB | wb(X, A, E) | simpleWb(X, A, E) | |||
Inhibitor | 50ICWB | icWb(X, A, E) | complexWb(X, A, I, E) | ||||
75RIWB | riWb(X, A, E) | ||||||
QRTPCR | 25RTPCR | qrtpcr(X, Y, E) | simpleQrtpcr(X, Y, E) | ||||
Inhibitor | 50ICQRTPCR | icqrtpcr(X, Y, I, E) | complexQrtpcr(X, Y, I, E) | ||||
Interaction | Precipitation | IP | 25IP | ip(X, S1) | oneToManyInteractionExp(X, S1) | ||
Pulldown | GSTPulldown | 25GSTPULLDOWN | gstPulldown(X, S1) | ||||
BDPulldown | 25BDPULLDOWN | bdPulldown(X, S1) | |||||
FRET | FRET | 50FRET | fret(X, Y) | oneToOneInteractionExp(X, Y) | |||
Cristallography | Cristallography | 1003D | threeD(S1) | manyInteractionExp(S1) | |||
Precipitation | IP | 125IPD | ipd(X, Y, S1, E) | effectOnOneToManyInteractionExp(X, Y, S1, E) | |||
Localization | Fluorescence Coloration | 25FLUO 25IHC | fluo(A, C, E)ihc(A, C, E) | detectionExp(A, C, E) |
