Figure 3

Number of extracted reactions. The number of reactions that are extracted from the initial model are given for three situations: (a) Transcriptomics data published by Birnbaum et al. are considered. The data is spatiotemporal resolved and covers the stele tissue and the cell-types endodermis (endo), cortex & endodermis (cortex/endo), epidermis (epi) and lateral root cap (lrc) for three developmental stages 1 (S1), the region between the root tip and 0.15 mm upwards (where the full diameter of the primary root is reached, stage 2 (S2), where cells originating from the root section between 0.15 mm to 0.30−0.45 mm away from the root tip, and stage 3 (S3), that is about 0.45 mm to 2 mm far away from the root tip. (b) Transcriptomics data published by Li et al.²⁵ are used spatial (cell-type) and (c) temporal (developmental stage) resolution.