Table 1 Differentially expressed genes (DEGs).

From: Transcriptomic response of breast cancer cells to anacardic acid

Comparison

Cutoff

Number of DEGs

MCF-7 AnAc vs. control

P ≤ 0.05

80 (↑36, ↓44)

MDA-MB-231 AnAc vs. control

P ≤ 0.05

886 (↑508, ↓ 378)

All Cells AnAc vs. All Cells controlz

P ≤ 0.05

25 (↑11, ↓14)

All MCF-7 vs. All MDA-MB-231y

Q ≤ 0.01; |FC| ≥ 2

6124 (↑3190, ↓2934)

  1. The log2-fold change with zero value in the control conditions were arbitrarily set to one plus the maximum log2-fold change value and those with zero value in the treatment conditions were arbitrarily set to the minimum log2-fold change value minus one. The number of differentially expressed genes in each comparison is shown and the number of upregulated genes indicated with the upward arrow and downregulated genes indicated by downward arrow.
  2. ZAll Cells is the sum of both cell lines.
  3. YSum of AnAc treatment and control for each cell line.
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