Table 2 Pipelines formed in WeFold2 and WeFold3, with their corresponding group number (assigned by the prediction center upon registration), category (tertiary structure prediction or refinement), number of targets attempted and groups involved.

From: An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12

WeFold

Pipeline Name

Group #

Category

Attempted Targets

Groups Involved

WeFold2

wf-Baker-UNRES

128

TSP

13

Baker, Scheraga, Gdansk

 

wfCPUNK

442

TSP

55

Floudas, Scheraga, Gdansk, Levitt

 

wfKsrFdit-BW-Sk-BW

336

TSP

25

Keasar, Baker/Foldit, Wallner, Seok

 

wfKsrFdit-BW-Sk-McG

120

TSP

27

Keasar, Baker/Foldit, Wallner, Seok, McGuffin

 

wfZhng-Ksr

173

TSP

25

Zhang, Keasar

 

wfZhng-Sk-BW

260

TSP

27

Zhang, Seok, Wallner

 

wfAll-Cheng

403

TSP

45

All WeFold Groups, Cheng

 

wfAll-MD-RFLB

153

TSP

46

All WeFold Groups, Delbem

 

wfMix-KFa

118

TSP

55

Baker/Foldit, Kloczkowski/Faraggi

 

wfMix-KFb

197

TSP

55

Baker/Foldit, Kloczkowski/Faraggi

 

wfMix-KPa

482

TSP

49

Baker/Foldit, Kloczkowski/Pawlowski

 

wfMix-KPb

056

TSP

49

Baker/Foldit, Kloczkowski/Pawlowski

 

wfHHpred-PTIGRESS

034

TSP

55

Söding, Floudas

 

wfKeasar-PTIGRESS

457

TSP

43

Keasar, Floudas

 

wf-AnthropicDreams

203

TSP

27

Keasar, Baker/Foldit

 

WeFold-Contenders

014

TSP

24

Keasar, Baker/Foldit

 

WeFold-GoScience

433

TSP

27

Keasar, Baker/Foldit

 

WeFold-Wiskers

281

TSP

7

Keasar, Baker/Foldit

 

wf-Void_Crushers

258

TSP

27

Keasar, Baker/Foldit

 

wfFdit-BW-KB-BW

208

Refinement

22

Baker/Foldit, Wallner, Levitt

 

wfFdit-K-McG

180

Refinement

23

Baker/Foldit, Wallner, Levitt, McGuffin

 

wfFdit_BW_K_SVGroup

154

Refinement

15

Baker/Foldit, Wallner, Levitt, SVLab

 

wfFdit_BW_SVGroup

334

Refinement

17

Baker/Foldit, Wallner, SVLab

WeFold3

wf-BAKER-UNRES

300

TSP

16

Baker, Scheraga, Gdansk

 

wfCPUNK

182

TSP

47

Floudas, Scheraga, Gdansk, Levitt

 

wfDB_BW_SVGroup

475

TSP

46

Baker, Wallner, SVLab

 

wfRosetta-MUfold

325

TSP

64

Baker, Wallner, Xu

 

wfRosetta-ProQ-MESHI

173

TSP

59

Baker, Wallner, Keasar

 

wfRosetta-ProQ-ModF6

252

TSP

58

Baker, Wallner, McGuffin

 

wfRosetta-Wallner

456

TSP

56

Baker, Wallner

 

wfRstta-PQ2-Seder

067

TSP

85

Baker, Wallner, Kloczkowski/Faraggi

 

wfRstta-PQ-MESHI-MSC

441

TSP

55

Baker, Wallner, Keasar, Mirzaei

 

wfAll-Cheng

239

TSP

77

All WeFold Groups, Cheng

 

wfMESHI-Seok

384

TSP

65

Keasar, Seok

 

wfMESHI-TIGRESS

303

TSP

61

Keasar, Floudas

  1. TSP is Tertiary Structure Prediction.