Table 1 Statistics for the performance of the four SNP assays used singly or combined.

From: High sample throughput genotyping for estimating C-lineage introgression in the dark honeybee: an accurate and cost-effective SNP-based tool

SNP Assay

# of SNPs

(i)

(ii)

(iii)

(iv)

(v)

(vi)

(vii)

(viii)

(ix)

M1

34

0.983

0.929

0.046

0.211

26

95.42

0.061

2

1

M2

32

0.981

0.919

0.051

0.239

24

94.86

0.068

3

2

M3

28

0.982

0.926

0.047

0.314

23

95.27

0.066

3

0

M4

23

0.980

0.911

0.050

0.283

23

95.00

0.067

0

2

M1 + M3

62

0.993

0.956

0.029

0.172

31

97.09

0.042

2

0

M1 + M2 + M3

94

0.994

0.957

0.031

0.137

28

96.94

0.040

3

0

M1 + M2 + M3 + M4

117

0.996

0.964

0.022

0.114

32

97.84

0.033

2

0

  1. Calculations were made via comparisons between Q-values inferred from the SNP assays and the genome-wide 2.399 million SNPs. (i) Pearson’s correlation coefficient (r); (ii) similarity score obtained by CLUMPAK; (iii) mean and (iv) maximum absolute accuracy errors; (v) number of individuals (out of 38) with absolute accuracy error <0.05; (vi) mean accuracy estimated via percentage of absolute error; (vii) absolute precision error; (viii) number of purebred A. m. mellifera individuals misclassified as admixed; (ix) number of admixed individuals misclassified as purebred.
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