Table 2 Diversity statistics, neutrality tests, and demographic analysis.

	Total	Lineage I	Lineage II	DRC	Zambia	Tanzania
# Samples	43	29	14	5	28	10
# Haplotypes	41	28	13	5	26	10
H_d (sd)	0.998 (0.006)	0.998 (0.010)	0.989 (0.031)	1.000 (0.126)	0.995 (0.011)	1.000 (0.045)
π (sd)	0.00625 (0.00054)	0.00237 (0.00019)	0.00500 (0.00033)	0.00163 (0.00022)	0.00668 (0.00046)	0.00611 (0.00139)
K	95.93	36.320	76.725	25.000	102.571	93.756
Neutrality Tests
Tajima’s D	−1.075	−1.841**	−1.040	−1.210	−0.514	0.023
Fu and Li’s D*	−1.912*	−2.385*	−0.908	−1.210*	−1.098	0.076
Fu and Li’s F*	−1.915	−2.606**	−1.086	−1.312	−1.069	0.071
Fu’s Fs	−4.278	−6.543	0.904	0.778	−0.514	0.0525
Mismatch Distribution: Demographic Expansion
SSD	0.00947	0.0123**	0.0284**	0.126**	0.013**	0.0365
Raggedness index	0.00309	0.00909*	0.0156	0.300	0.00638	0.0415
Mismatch Distribution: Spatial Expansion
SSD	0.00939**	0.0135	0.0202	0.118**	0.0103**	0.034
Raggedness index	0.00309	0.00909	0.0156	0.300	0.00638	0.0415

Samples have been split into two general comparisons: lineage I vs lineage II and DRC vs Tanzania vs Zambia. p-value is indicated by *0.10 > p > 0.05 or **p < 0.05.

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