Table 3 Analysis of KEGG enrichment for DEGs from the four comparison groups.
From: Transcriptome analysis of two contrasting rice cultivars during alkaline stress
KEGG pathway | Number of genes | P-value |
|---|---|---|
CD VS. WD | ||
Peroxisome | 4 | 0.00824 |
Citrate cycle (TCA cycle) | 3 | 0.014718 |
Glyoxylate and dicarboxylate metabolism | 3 | 0.021394 |
CDT VS. CD | ||
Ribosome | 148 | 0.001675 |
Tryptophan metabolism | 14 | 0.006377 |
Fatty acid degradation | 26 | 0.008806 |
Plant hormone signal transduction | 84 | 0.011027 |
Limonene and pinene degradation | 12 | 0.015622 |
Porphyrin and chlorophyll metabolism | 22 | 0.016304 |
alpha-Linolenic acid metabolism | 21 | 0.017051 |
Phenylalanine, tyrosine and tryptophan biosynthesis | 24 | 0.026828 |
Biosynthesis of secondary metabolites | 296 | 0.027286 |
Valine, leucine and isoleucine degradation | 21 | 0.031889 |
Glycerolipid metabolism | 24 | 0.032142 |
Fatty acid metabolism | 36 | 0.03252 |
Cutin, suberine and wax biosynthesis | 12 | 0.039417 |
CDT VS. WDT | ||
Diterpenoid biosynthesis | 5 | 0.000178 |
Biosynthesis of secondary metabolites | 23 | 0.007861 |
Fatty acid elongation | 3 | 0.010221 |
Limonene and pinene degradation | 2 | 0.029038 |
Cutin, suberine and wax biosynthesis | 2 | 0.040045 |
Stilbenoid, diarylheptanoid and gingerol biosynthesis | 2 | 0.044012 |
WDT VS. WD | ||
Ribosome biogenesis in eukaryotes | 9 | 4.97E-06 |
Plant hormone signal transduction | 6 | 0.036989 |
Galactose metabolism | 3 | 0.037562 |
Starch and sucrose metabolism | 5 | 0.045365 |
