Table 5 Differential alternative splicing analysis for IAR DEGs from the three categories.
From: Transcriptome analysis of two contrasting rice cultivars during alkaline stress
Event type | Groups | Gene | FDR |
|---|---|---|---|
SAR | |||
MXE | CDT VS. CD | LOC_Os04g52500 | 1.95E-25 |
LOC_Os05g11560 | 4.51E-11 | ||
LOC_Os02g54254 | 7.72E-24 | ||
CDT VS. WDT | LOC_Os02g09810 | 1.86E-10 | |
LOC_Os05g39770 | 2.53E-42 | ||
RI | CDT VS. CD | LOC_Os06g13560 | 1.55E-09 |
CDT VS. WDT | LOC_Os06g13560 | 0.005939 | |
SE | CDT VS. CD | LOC_Os04g52500 | 3.87E-07 |
LOC_Os02g54254 | 1.11E-19 | ||
CDT VS. WDT | LOC_Os03g49380 | 7.09E-44 | |
LOC_Os04g10060 | 0.000605 | ||
LOC_Os02g02210 | 0.043366 | ||
CAR | |||
A3SS | CDT VS. CD | LOC_Os05g46460 | 1.09E-06 |
CDT VS. WDT | LOC_Os05g46460 | 7.49E-08 | |
MXE | CDT VS. WDT | LOC_Os08g30020 | 0.011291 |
LOC_Os12g26290 | 3.87E-64 | ||
WDT VS. WD | LOC_Os05g46460 | 0.002765 | |
LOC_Os08g30020 | 0.000242 | ||
LOC_Os12g26290 | 5.73E-46 | ||
RI | CDT VS. CD | LOC_Os05g46460 | 1.14E-16 |
CDT VS. WDT | LOC_Os05g46460 | 1.83E-05 | |
WDT VS. WD | LOC_Os07g38840 | 7.74E-08 | |
SE | CDT VS. WDT | LOC_Os03g55660 | 1.99E-07 |
LOC_Os05g33570 | 6.07E-05 | ||
WDT VS. WD | LOC_Os12g26290 | 0.008074 | |
