Table 6 List of transport-related genes among the DEGs detected by RNA-Seq.
From: Transcriptome analysis of two contrasting rice cultivars during alkaline stress
Gene ID (name) | Gene annotation/Function | FDR | Log2FC |
|---|---|---|---|
LOC_Os12g22110 | ABC-2 type transporter | 0.00334 | −3.0193 |
LOC_Os11g39020 | ABC transporter | 0.007371 | 3.9748 |
LOC_Os11g05700 | ABC transporter | 0.023961 | 2.8287 |
LOC_Os09g39910 | ABC transporter | 0.001744 | 3.0473 |
LOC_Os08g43120 | ABC transporter | 1.55E-07 | 9.4171 |
LOC_Os08g30770 | ABC transporter | 0.00254 | 3.3529 |
LOC_Os04g49570 (GLR3.1) | Glutamate receptor (GLR) | 0.005568 | −2.4478 |
LOC_Os10g42180 | Aluminum activated malate transporter (ALMT) | 0.049301 | 1.7209 |
LOC_Os06g15779 | Aluminum activated malate transporter (ALMT) | 0.00494 | −2.521 |
LOC_Os10g40600 (NRT1.1B) | Nitrate transporter (NRT) | 4.35E-12 | −6.7887 |
LOC_Os02g02190 (OsNRT2.2) | High-affinity Nitrate Transporter | 0.011704 | 5.4363 |
LOC_Os01g50820 (OsNRT2.3) | High-affinity Nitrate Transporter | 0.019461 | 2.5345 |
LOC_Os03g06410(OsMAPKKK1) | Mitogen-activated protein kinase kinase kinase | 0.003639 | 2.3836 |
LOC_Os02g54600 (OsMKK4) | Mitogen-activated protein kinase (MAPK) | 0.006223 | 2.6097 |
LOC_Os09g36420 (OsHSP50.2) | Heat shock protein HSP) | 0.012639 | −2.5661 |
LOC_Os08g39140 (hsp82A) | Heat shock protein (HSP) | 0.009624 | 2.3063 |
LOC_Os03g16860 (OsHSP71.1) | Rice heat shock protein gene | 0.001602 | 3.0682 |
LOC_Os12g41490 | Cysteine-rich receptor-like protein kinase (CPK) | 8.61E-06 | 4.345 |
LOC_Os11g44860 | Cysteine-rich receptor-like protein kinase (CRK) | 0.039593 | 2.3565 |
