Table 1 Comparison of four genotype datasets in IBM RIL population.

From: Genotype-Corrector: improved genotype calls for genetic mapping in F2 and RIL populations

Genotype dataset

SNPs No.

Missing Rate

Accuracy

Homo1

33,131

28.5%

84.9%

Homo2

18,182

26.4%

93.5%

Homo3

13,730

26.2%

95.7%

Homo4

11,394

26.5%

96.5%

  1. Four genotype datasets Homo1 to Homo4 were generated based on different criteria to make a homozygous genotype call. Accuracy is defined as the concordance rate [Equation 4].
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